Geoalkalibacter subterraneus: GSUB_12470
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Entry
GSUB_12470 CDS
T03585
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gsb
Geoalkalibacter subterraneus
Pathway
gsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSUB_12470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsb03019
]
GSUB_12470
Enzymes [BR:
gsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSUB_12470
Messenger RNA biogenesis [BR:
gsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GSUB_12470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Utp25_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJF07205
UniProt:
A0A0B5FSS5
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All DBs
Position
complement(2678366..2679643)
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AA seq
425 aa
AA seq
DB search
MKFTELDLPAEVRQGIEAVGFTDLTPVQEESIPLALAGHDVTGKAQTGTGKTAAFLISLF
TRMLRNPRKTGSNPRALILAPTRELVAQIHDDAQALGAHCPFKVQPIFGGVDYQKQRDAL
RDGVDVIVATPGRLIDYAKQKVFSFNHIEFLVIDEADRMFDMGFIRDLRFILRRLPPFDQ
RQTMLFSATMSHRVRELAYEFMNVAEQVEVEPEQVTAELVEQLLFHVSRREKFPLLLGLL
AQEENADRIMIFVNTKKEAEHLTERLKVNDFKAAVLSGDIPQKKRIRILDDFKQGRLRAL
VATDVASRGIHIDDVSHVINYDLPEDPEDYVHRIGRTARAGAQGKAFSLADENLVLHLPD
IEGYIGRKVPSCIPGENDFIWDYKRPHPRKKAPVPEKKTSGAEKNKSSRRRRPRRKPAGG
KPAGS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgaactagatctgccagctgaagtccgtcaagggatcgaggcggtggga
ttcaccgatctgactcccgtccaggaggagtcaattccgttggcgctggccgggcacgac
gtgaccggcaaagcccagacaggcaccggcaaaacggcggcttttctcatttcactcttc
acccgcatgttgcgcaatcctcgcaagacgggctcgaatccacgggcgctcattcttgcg
ccgacccgcgagcttgtcgcgcagattcacgacgacgcccaagccttgggagcgcactgc
ccttttaaggttcagccgatattcggcggtgttgattatcagaaacaacgcgacgcgctg
cgcgacggggtcgatgtgatcgtggccactccggggcgactgatcgattatgccaaacag
aaggttttcagtttcaaccatatcgaattcctggtgatcgacgaggccgaccgcatgttc
gatatgggctttatccgcgacctgcgctttatcctgcgtcggctcccccctttcgaccag
cggcagaccatgcttttttcggccacgatgtcccatcgcgtgcgggagctggcctacgaa
ttcatgaatgtggcagaacaggttgaggtcgagccggaacaggtcactgccgagctggtc
gaacagctcctgtttcacgtgtcgcgacgggaaaaattcccgctgctgctcggcctgctg
gcacaggaagagaatgccgaccgaatcatgatcttcgtcaacactaaaaaggaagccgag
catctgaccgagcgcctcaaggtgaatgatttcaaggccgccgttctctcgggcgatatc
ccgcagaagaagcggattcgcatccttgatgatttcaagcaggggcgcctgcgtgcgctg
gtggcgaccgacgtggcatcacgcgggattcatatcgacgatgtcagtcatgtcatcaac
tatgatctgccggaagacccggaagactatgttcatcggatcggacggacggcgcgtgcc
ggtgctcaggggaaggctttctctctggcggatgagaacctggttctgcacctgccggac
attgaagggtatatcggccgcaaagtgccgagttgcatcccgggggaaaacgattttatc
tgggactataaacgaccccatccgcgcaaaaaggctccggtaccggaaaagaaaaccagc
ggtgctgaaaaaaataagtcttcccgccgtcgccggccgcggcgcaaacccgcaggggga
aaaccggcaggatcttga
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