Geoalkalibacter subterraneus: GSUB_12680
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Entry
GSUB_12680 CDS
T03585
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gsb
Geoalkalibacter subterraneus
Pathway
gsb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GSUB_12680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsb03021
]
GSUB_12680
03400 DNA repair and recombination proteins [BR:
gsb03400
]
GSUB_12680
Enzymes [BR:
gsb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GSUB_12680
Transcription machinery [BR:
gsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GSUB_12680
DNA repair and recombination proteins [BR:
gsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GSUB_12680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
TyeA
Motif
Other DBs
NCBI-ProteinID:
AJF07245
UniProt:
A0A0B5FSW1
LinkDB
All DBs
Position
complement(2706407..2710555)
Genome browser
AA seq
1382 aa
AA seq
DB search
MEDIFSLSERPKDPLSFNAIRLSISSPEKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLACPVAHIWFLKSL
PSRIGTLLDMTLKELEKVLYFEAYVVLDGGDTDLQQGQLLTEDKYREAMEEFAGQFSAGM
GAESIRELLMQLELEELGVSLRQEMKDAASEAKRKKVAKRLKVVEAFRASGNRPEWMILE
TIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEVIIRNEKRMLQ
ESVDALFDNGRRGRAITGPNKRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVVGPE
LKMHQCGLPKKMALELFKPFIYNKLEEKGFCTTIKSAKKLVEKEKPEVWDVLDEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQLEA
RVLMMSTNNILSPANGKPIIVPSQDMVLGLYYMTRERVFAQGEGKLFADPEEVRVAYDAG
AVDLQARIKVRISPAVGEAPQLTETTVGRILLREVVPEGIAFEHINRVLGKKQVGELIDV
CFRACGNKDTVILADRLKETGYKFSTMAGISICLDDMHIPSSKEERINKAVEEVKEIQQQ
YTEGLITDGERYNKVIDIWAKCAEEIGQTMLDNLSVDVLTSESGETVKAPSFNAIHMMAD
SGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTA
LKTANSGYLTRRLVDVAQDAIITEDDCGTLDGITIASLTEGGEVIEPLGDRILGRVALED
VLDPMTGDVLVEANSEIDEALVDKIADAGIERIKIRSVLTCQSRRGVCALCYGRDLAHGH
MVNLGEAIGVIAAQSIGEPGTQLTMRTFHVGGTASRRAEQTTLEARFEGSLKYIRLNTVE
DEFGHHVVMNRNGELAVVDESGRERERYGVVYGAKIPIADGGEVKPGALLAEWDPYTIPI
LTEVAGRVRFGDMIEGITMEEQLDEVTGLSRKVIIESKDPDKRPRITLKDEDGKTVKMPN
GAAARYMLPVGANIVVSDDCLVKAGAVLAKMPRETTKTKDITGGLPRVAELFEARKPKEY
AIISEIDGQVSFGKDSKGKRKVIVTPEFGEPKEYLIPKGKHISVHEGDHVRAGELLMDGS
SNPHDILKVLGEKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRIKEVGDTRF
LLDDQVDRYEFEDENNKALAEGRAPAVGEPLMLGITKASLSTESFISAASFQETTKVLTQ
AAIEGKIDFLRGLKENVIMGRLIPAGTGVAKYRSVKLLIEEPEEVEEVFELDDVGEEEPL
GE
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
ttggaagatattttcagcctctctgaacgtccgaaggatccgttgagtttcaacgctatc
cggctcagtatttcttccccggagaagattcgcgaacgttctttcggtgaagttaagaaa
cccgagaccatcaattaccggactttcaagcccgaacgtgacggtcttttctgcgccaaa
atttttggacctaccaaggactacgaatgtaattgcggcaaatacaagcgcatgaagcat
cgtggtatcgtttgcgaaaagtgcggcgtggaggtgatccccagcaaggttcggcgtgag
cgtctcgggcatattgatctggcctgcccggttgcccatatctggttcctcaagtcactg
ccttccagaatcggtacgctgctggacatgacattgaaggaactggagaaagttctctac
ttcgaggcctatgtcgttcttgacggtggcgataccgatctgcagcagggtcagttgtta
accgaggacaagtatcgtgaggccatggaggaatttgccggtcaattctctgccggcatg
ggagccgagtcgatccgcgaactgctcatgcagctcgaacttgaagagttgggcgtttcc
ctgcgtcaggagatgaaagatgcggccagcgaggccaagcgcaagaaagtcgccaagcgc
ctcaaggtcgtggaggcttttcgtgccagcgggaatcgccccgagtggatgattctggag
actatcccggtgctgcctcccgagctgcgcccgctcgttcctcttgacggaggacgtttt
gcgacttccgacctcaacgacctctatcgaagagtcatcaatcgtaacaaccgtcttaag
cggttgatcgaactgcgcgcacccgaagtcatcatccgcaatgaaaagcggatgctgcag
gagtcggttgacgccctgttcgacaacggtcgccgcggcagggcgatcaccggacccaac
aagcgtccgttgaagtccctgtccgacatgctcaagggtaagggtggacgttttcgccag
aacctgctcggcaagcgcgtcgattattcaggccgttccgttatcgttgtcggccctgaa
ctcaagatgcaccagtgcggtcttcccaagaagatggcgctcgaactgttcaagcctttt
atctacaacaagcttgaagaaaaagggttctgcacgaccatcaagagcgccaagaaactg
gtcgagaaggaaaaacccgaggtctgggacgtgcttgacgaggtgatcaaagagcacccc
gttatgcttaaccgcgcacccacactgcaccgtcttggtatccaggcctttgagcccgtg
ctgatcgagggcaaggcgatccaactccacccgctggtctgtaccgcattcaatgccgac
ttcgacggcgaccagatggcggtccatctgcccctctctatcgaaagtcagcttgaggcc
cgcgtgttgatgatgtcgaccaataacatcctctcgcctgccaacggtaagccgattatt
gtaccatctcaggatatggtgctcggtctgtattatatgacccgggagcgagttttcgcc
cagggcgaggggaagctgttcgctgatcccgaagaggtgcgcgtggcctatgacgccggc
gccgtggatcttcaggcgcgcatcaaggttcgcatttcgcccgctgtcggtgaagccccg
caactgaccgagaccaccgtcgggcgcatcctgctgcgtgaagttgttcctgaggggatt
gccttcgagcatatcaatcgcgtcctcggcaaaaagcaggtcggtgagctgatagatgtc
tgcttccgtgcctgcggcaacaaggatacggttattcttgccgaccgcctcaaggagacc
ggttacaagttttccaccatggccggcatctcgatctgtctcgacgacatgcatatccct
tcctccaaagaggaacgaatcaataaagcggttgaggaggtcaaggagattcagcaacag
tacaccgaaggcctgattaccgatggcgagcgctacaacaaggttatcgacatctgggcc
aagtgtgctgaggagatcgggcagaccatgctcgacaacctgtcggttgatgttctgacg
tctgaatccggtgaaacggttaaagctccctctttcaatgccattcatatgatggccgac
tcgggagcccgcggcagcgcccagcagattcgccagctggccggcatgcgcggcctgatg
gccaagccgtccggtgagatcatcgaaactccgatcacggccaatttccgtgagggcctg
acggtgctccagtacttcatctctacccatggtgctcgtaagggtcttgcggatacggcg
ctcaagaccgctaactccggttatctgacgcgtcgtcttgtcgatgtggcgcaggatgct
attatcactgaagacgactgcgggactcttgacgggataactatagcgtcactgaccgaa
ggtggcgaggtgatcgagcctctgggtgatcgtatccttgggcgcgttgctcttgaagac
gttcttgatccgatgaccggcgacgtcctggtggaagccaacagcgagattgacgaagcg
ctggtggacaagatcgccgacgcggggatcgagagaatcaagatccgctccgttctcacc
tgccagagcaggcggggggtttgcgccctgtgctatgggcgcgatctggcgcatggccac
atggttaacctcggcgaagcgatcggcgttatcgccgctcagtccatcggggagcccggt
acccagctgaccatgcggaccttccacgtcggtggtacggcatcccggcgtgctgagcag
accacccttgaggcacgctttgaaggaagtctcaagtacatccgtctcaatacggtcgaa
gatgaattcggccaccacgtcgttatgaaccgcaatggcgagttggcggttgtggacgag
tctggacgtgaacgtgaacgttatggcgtcgtttacggcgccaagatccccattgcagac
ggaggcgaagtcaagcctggtgctctgctggcagaatgggacccctacaccattccgatc
cttaccgaagttgcaggtcgcgtgcgtttcggcgacatgatcgaggggattaccatggag
gagcagctcgatgaggtcaccggcctttcgcgcaaggtgattatcgagtcaaaggatccc
gacaagcggccgcgcattacgctcaaggacgaggacggtaaaaccgtcaagatgcccaac
ggcgcagcggctcgttacatgctgccggtcggagcgaatattgttgtttccgatgattgc
ttagtcaaggcaggtgctgttcttgccaagatgccccgcgaaaccaccaagaccaaggat
attaccggcggtctgccgcgggttgccgaactcttcgaggcccgcaagcccaaagagtac
gcgattatttccgagatcgacggccaggtttcattcggcaaggactccaagggcaagcgc
aaggtcattgtcacgccggagttcggtgaaccgaaagagtacttgattcccaaaggtaaa
cacatcagcgtgcatgagggcgatcatgttcgcgccggcgaattgctgatggacggctcg
agcaatccccacgacatcttgaaggtgttgggcgagaaagagcttgccaagtatcttgtt
gacgaggtgcaggaggtttaccgcctgcagggggtcaagatcaacgacaagcatatcgag
accatcgtacggcagatgttgcggcgtgtccgcatcaaagaagtcggcgacacccgcttc
ctgctcgatgaccaggttgaccggtacgagtttgaagacgaaaacaacaaggccttggct
gaagggagggcgccggctgttggtgaaccgctcatgctcggcattaccaaggcatcgctg
tcgaccgaatctttcatctccgctgcttcgttccaggagaccaccaaggttctgacccag
gcggctatcgagggtaagatcgacttcctgcgcggcctgaaggagaacgtcattatgggg
cgcctgatccctgccggaacaggggtcgccaagtaccgttcagtcaagctcctgatagag
gaaccggaagaagtcgaagaggttttcgaattggacgatgtcggggaggaggaacccctc
ggcgaataa
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