Geoalkalibacter subterraneus: GSUB_15650
Help
Entry
GSUB_15650 CDS
T03585
Name
(GenBank) helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gsb
Geoalkalibacter subterraneus
Pathway
gsb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GSUB_15650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsb03400
]
GSUB_15650
Enzymes [BR:
gsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GSUB_15650
DNA repair and recombination proteins [BR:
gsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GSUB_15650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_22
UB2H
DUF7053
Motif
Other DBs
NCBI-ProteinID:
AJF08092
UniProt:
A0A0B5FIR8
LinkDB
All DBs
Position
3326684..3330121
Genome browser
AA seq
1145 aa
AA seq
DB search
MLQQVREGARRIEIQGLTGSCDAFLLAALLRETTEPLYILTPDESSAERLAGDLAFYWEQ
PEQICLFPQWEVTPFEPLSPHPEVEARRIATLAAMLDGSARAVILPVRAAMQRVIPRTIL
QDLSLSLKVEDEYERSPLLHRLHELGYQSVPLVEDRGTFAVRGDIIDVFPPTHDMPLRLE
FFGDFIERIRPFDPADQRSREEEIKEFTLLPAREMVLAGSHWDRFTRRFKERCDALDLPR
PQREQRLEALREGLLAPGSHFLLPLNYEGLDTFFDYAGTGRWTIVEPARLEQESDSFAAE
TLNGEQRAIDKGEPYGSCRELYLSSSELEAHLSRAPSRLDLVALQVYRLEDERPSLHFDV
QGNGDLRAALKAEGGTLPPLVERLRQWRNEGWRVLLVCHQRGQAERLQDLLEPHGASPPF
DPDARFGEARKGQALLVLGDLSAGFRLPDERLAVITEEDIFGVRTRRRGRAGAKARAMLS
SLAEIKEGDFIVHTDHGVGIYRGLRHLALGDVEGDFMHLEYAGGDKLYLPVDRIEKVQKY
VASEGHAPRLDKMGGQGWEKAKLRARAAAEELARELLKIYAQREMASAFSFSPPDRMYRE
FEAAFPYEETPDQAQAIEEVLADMQNERPMDRIVCGDVGYGKTEVAIRAAFKAVEDGKQA
AVLVPTTVLARQHWQTFRERFSDAAVTVEMVSRLRTSADIKKTLERAAEGKVDILIGTHR
LLQRDVRFKDLGLLIVDEEQRFGVSHKEKLKKMRAAVDVLTLTATPIPRTLHMSLAGLRD
LSVIDTAPVDRLAVRTYVTKFDDDVIAEAIRRELRRGGQVFFVHNRVQSINAMAEFVQTL
VPEARVAVGHGQMGEKQLEQVMLDFIEGRANVLVCSTIIENGIDIARANTIIINRADCFG
LAQLYQLRGRVGRSKVRAYAYLLIPGEATLTREARERLKVLQDLSDLGSGFRIASHDLEL
RGAGDLLGGNQSGQIAAIGFEMYSDLLEETIAELKGLEREQKIDPEIKLGLSAFLPEKYM
PDPNQRLVFYKKLAAADDEQTLYEVVDELRDRYGELPEPAQVLHEQMKLRVLMKQLKIEL
AEFTGRRLIFSFHAETPVPPEKILARLDDPERYSFTPDYRLSINLGRMSREDVLQAAKKE
LKAFL
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
ctgctgcaacaggtgcgcgaaggcgcgcggcgtatagaaatccaggggctgaccggctcc
tgcgatgcctttctgctggccgcactgctgcgcgaaaccaccgaacccctctacatcctc
acgccagacgagagcagcgccgagcgactggccggcgatcttgccttttactgggaacag
cccgagcagatctgtctctttccgcagtgggaagtcaccccttttgaacccctctccccc
catcccgaagtggaagcacgccgcatcgccaccctggccgccatgctcgacggcagcgcc
cgggcggtgattctgccggtccgcgccgccatgcagcgcgtgatcccacgtactatcctc
caagatctgagcctgagtctgaaggttgaggatgaatacgagcgctccccccttctgcac
cgcctgcacgagctgggctaccaatcggtgccgctggtggaagatcgcggcactttcgct
gtacggggcgatatcatcgacgtcttcccgccgacccatgacatgcccttgcggctggaa
tttttcggcgatttcatcgagcgcatccgccccttcgatcccgccgaccagcgctcgcgc
gaggaagagatcaaagaattcaccctgctgccggcacgggagatggttctggctggctcg
cactgggaccggttcacgcgccgcttcaaggagcgctgcgatgccctcgacctgccgcgt
ccccaacgggaacaacgcctcgaggcgctgcgcgaagggcttctggccccggggagccac
tttctgctgcccctcaactacgaagggctcgacacttttttcgattacgccggcaccggg
cgctggacgatcgttgaaccggcccgccttgaacaggagtccgacagcttcgccgccgaa
acactcaacggtgaacagcgggcgatcgacaagggagagccttacggcagctgccgggaa
ctctacctgtccagcagtgaactggaagcgcatctttcccgggcaccgtctcgcctcgac
ctggtggcgctgcaggtctatcgactcgaggacgagcgccccagccttcatttcgacgtc
cagggcaatggcgatctgcgcgccgccctcaaagccgaagggggcaccctgccgccgctg
gtggagaggttgcgccagtggcgtaatgagggctggcgcgtcctgctggtctgtcaccag
cgcggccaggccgaacgactgcaggatcttctcgaaccgcacggcgcatcaccacctttt
gatccggatgcgcgtttcggcgaggcacgcaaggggcaggcgctgctggtgcttggggac
ctgtccgccggcttccgcctgccggatgagcgcctggccgtcattaccgaggaggatatc
ttcggagtccggacgcgccgccggggccgggccggggccaaggcgcgggccatgctctcc
tcgctggccgaaatcaaggaaggcgacttcatcgtgcacaccgaccacggcgtcggcatc
tatcgcggcctgcgccatcttgccctgggagatgtcgagggcgatttcatgcaccttgaa
tatgccggcggcgacaagctttacctgccggtggatcgcatcgaaaaggtgcaaaagtat
gtcgccagtgaagggcacgcgccgcgtctcgacaaaatgggcggccaggggtgggaaaaa
gccaagctgcgggcgcgcgccgccgccgaggaactggcgcgggagctgctcaagatctac
gctcagcgcgagatggccagcgctttctccttctcgccgccggatcgcatgtatcgcgaa
ttcgaggcggccttcccctacgaggagacccccgaccaggcccaggccatcgaagaagtg
ctggccgacatgcagaatgaacgccccatggatcgcatcgtgtgcggcgatgtcggctat
ggcaaaaccgaggtcgccatccgcgctgccttcaaagcggtggaggacggcaagcaggca
gcggtgctggttcccacaacggtgctggcgcgccagcactggcagacctttcgcgaacgt
ttctccgatgcagccgtcactgttgaaatggtctcgcgcctgcgcacctcagccgacatc
aaaaaaaccctcgagcgcgccgccgaagggaaggtcgatatcctgatcggcacccaccgc
ctgctgcagcgcgatgtgcgcttcaaggatctgggtctgctcattgtcgatgaggagcag
cgcttcggcgtcagtcacaaggaaaaactcaagaagatgcgcgccgcggtcgacgtgctg
accctcaccgccacccccattccgcgcacgctgcacatgagcctcgccggtttgcgcgac
ctgtctgttatcgataccgcgccggtggaccggctggcggtgcgtacctatgtcaccaag
ttcgacgatgatgtgatcgccgaggcgatccggcgcgagctgaggcgtggcggccaggtc
ttcttcgtccacaaccgggtgcagtccatcaacgccatggccgaattcgtgcagaccctg
gtccccgaagcgcgggtggcggtcggacacgggcagatgggggaaaaacagctcgaacag
gtgatgctcgacttcatcgaagggcgcgccaatgtgctggtgtgcagcaccatcatcgaa
aacggcatcgacatcgcgcgggccaacaccatcatcatcaaccgtgcggactgcttcggg
ctggcgcaactctaccagctgcgcggccgggtcggacgttccaaggtgcgcgcctacgcc
tacctgctcatccccggcgaagccaccctcacccgcgaagcccgcgagcggctgaaggtc
ctgcaggacctctccgacctggggtcaggcttccgtatcgccagccacgacctggagctg
cgtggtgcaggcgatctgcttggcggcaaccaatccggccagatcgccgccatcggcttc
gagatgtacagcgacctgctggaggaaaccatcgccgaactcaaggggctcgagcgcgaa
cagaagatcgatccggagatcaaactggggctgtcagctttcctgcccgaaaaatacatg
cccgatcccaaccagcgtctggtattctataaaaaactggcggccgccgatgacgaacag
accctgtatgaggtggtcgatgaactgcgcgaccgctacggggagctgccggagccggcc
caggtgctgcacgagcagatgaaactgcgcgtgttgatgaaacagctcaaaatcgagctg
gccgaatttaccgggcgacgccttattttttcttttcatgccgaaactccggtcccgccg
gagaagatcctggcaaggctcgatgaccctgaacgctacagcttcactcccgattaccgg
ctcagcatcaacctcggccgcatgtcgcgcgaggatgtgctgcaggcggcaaaaaaagaa
ttgaaagcatttctttag
DBGET
integrated database retrieval system
