Geochorda subterranea: VLY81_03720
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Entry
VLY81_03720 CDS
T10455
Name
(GenBank) DEAD/DEAH box helicase
Organism
gsc Geochorda subterranea
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_assoc
WH_Lhr
DEAD
WH4_Lhr
Helicase_C
ResIII
HTH_IclR
Cas3-like_C_2
DUF6211
GntR
Motif
Other DBs
NCBI-ProteinID:
WRP15285
UniProt:
A0ABZ1BRN2
LinkDB
All DBs
Position
complement(791118..795461)
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AA seq
1447 aa
AA seq
DB search
MQRLGWPAIRSGHDVVLSAPTGSGKTLAAFLVTLDELLRTPREDCPRVHTVYVSPLRALS
HDIHRTLQQPLTEMAALARDRGQPWPGIEVGVRTADTPARQRRAMARRPPHVLVTTPESF
FLLLLSPATRPTLLRARRVIVDEVHALAPSKRGVLLALSLELRDHLAGDRAQRVGLSATI
EPPEAAALWLGGARAEGVRVLEAGGRKPLALEVSVPGLGLPEEEGSVWPSVARRLLELIE
AHRTTLVFVNNRRLAERLTHLVNDLAGRRLVLTHHGSMARPARLYVEEALKSGEIKAVVA
TSTLELGIDVGAVDLVVQVQAPKQVAQGLQRLGRSGHAVTGTRRGILLATHPADLLEASA
AARAMAAGDIEPTRPLSGGLDVLVQFVVGAAAVQEWDEDALLRLVRRTAAFSDLSREMFR
EVLALAAGELPDGRWRPRVRWDRQRGRIRSAEGALTVLYAGAGTIPDRGLYPVYLQGTDV
KLGELDEEFTYESRRGDVFWLGMGTWRIEAIKPDRVVVSPAPHEGPALLPFWRGDAPGRS
THLGRWVGETLERMSERLEACPSDDGAISELRGWLREHACLDEPAADALARLLVRQWRAC
GTLPTDRRVVVETFPDELGDRRIVLHSPWGRAVHRAWAVAIEGYLRARGLTPDTVAADDG
LMVRLPAEADVDPDELCRLGGQDPTALVQAWLPTSHLVAQRFREAATRALLIPRSHRARR
QPLWLQRLRAADLLDQATRTGAAGVLLQEAIREAATEDLDVATMARLVRGLQRGEIEGRV
VERRVPSPLAAAMLAAFTQSYLYRPDAPKAQARPTLLMGAPEELLRQAAAAGTLEHLVDA
RALQEVAERHRFPAWLGARPPDGIERLEDWLRFAGDIRDRELEEALGSEAPWQAWMEALV
RQGRALRRGALWVHALLAPALEALESEELQQRVDALAALLSHRLPSRPGPWRVEEVAERY
DVPLPVARGALGVLEARGLVLRATLRAGEAPVYVAVAGLLEARRRTLQRARAEAAPLPIS
RYQAFVLRRHGVVRSRERPETDTGTQLLTRRLSTLAGVRARWSDWVAMLAARLGRDPRPD
LARAIASGQIGWAVVATAGEDQREPRVTLFPRAQASATYLAGPAVSEPQLSAEARAVLAL
LQRGGSWFGWEVASQAGLDLEAAARALLELVRAGLAGAESLELLEAAARAPRRDVPVAVG
SPPGAYRRPARAVRRAARRALSRRVVAKPDVGLVRFYLAGHDPGAPAQRAEAWAEALLAR
YGIVSRSVAAAEGIPVPWSHVAQALETMEAQGRIQRVYAVEGLDGEQFAREADAEALRSG
ADDAGGPPARGWATASVDPAVTVGWAGHPPAWWPAGPPTGLVAGVGPQPILLLRPASGGL
WHDPGACPEALGQALEAAVRVAGMAFPGRRLIVRTVQGIPVPHDRGRLAWIRAAGFAEGP
RTLERWV
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcggctcgggtggcctgccatccggtcggggcatgacgtggtgctgtcggccccg
accgggtccggcaagacgctggcggccttcctggtgacgctcgacgagctgctgcgcacg
ccgcgagaggactgcccgcgcgtccacaccgtctacgtctcgcccctgcgggccctgagc
cacgacatccaccgcacgctgcaacagcccctgaccgagatggccgccctcgcccgtgac
cggggccagccgtggcccggcatcgaggtcggggtgcgcaccgctgacacccctgcccgg
cagcgccgggccatggcgcgccgccccccgcatgtcctggtcacgaccccggagtccttc
ttcttgttgctcctgtcgccggcgacgcgccccaccctgcttcgggcgcgccgggtcatc
gtcgacgaggtgcacgcgctggccccgagcaagcgaggcgtgctcctggcgctcagcctg
gagctgagggaccacctggcgggcgaccgggcccagcgcgtggggctgtcggccaccatc
gagccgccggaggccgccgctctctggctcggcggtgcccgcgcagaaggggtgcgggtg
ctcgaggcaggcggccgcaagcccctggccctcgaggtgagcgtgcccggcctcggactg
ccggaggaggaggggtcggtctggccgtcggtagcgcggcggctcctggagctcatcgag
gcccaccgcaccaccctggtcttcgtcaacaaccgccgcctggcggagcgcctcacgcac
ctcgtcaacgatctggccggacgtcgcctcgtcctcacccaccacggcagcatggcgcgg
cccgcccgcctctacgtggaggaagcgctcaagtccggtgagatcaaggccgtggtggcc
acctccaccctcgagctgggcatcgacgtgggagccgtcgatctggtcgtccaggtccag
gcgcccaagcaggtggcccagggactgcagcggctgggtcgctccggccatgccgtcacg
ggcacccgtcggggcatcctgctggccacgcaccccgccgacctgctggaggcctcggcc
gccgcccgtgccatggccgccggcgacatcgagcccacccggccgctgtcgggcgggctc
gatgtgctggtgcagttcgtggtcggggccgccgcggtccaggagtgggacgaggatgcc
ctgctccgactggtccgccggacggccgcattctcggacctttcccgggaaatgtttcga
gaggtcctggccctggcagccggcgagctccccgacgggcgttggcggccccgtgtgcgt
tgggatcgccagcgcgggcgcatccgtagcgccgagggagccctgacggtgctctacgcg
ggcgccggcaccatcccggaccgggggctgtatcccgtctacctgcagggtaccgacgtc
aaactcggcgagctggacgaggagttcacctacgagagccgccggggcgacgtcttctgg
ctcggcatgggcacgtggcgcatcgaggccatcaagcccgaccgggtcgtggtcagcccc
gcccctcacgagggacccgccctgctgccgttttggcggggggacgcgccgggccgctcc
actcacctcgggcgctgggtcggggagacgctggagcggatgagcgagcgcctggaggcc
tgcccctccgacgatggagcgatctcggagctgcgggggtggctgcgcgagcacgcctgc
ctggatgagccggctgccgacgctctggcccgcctgctggtccgccagtggagagcatgc
ggcacgctccccacggaccgccgggtcgtggtcgagacctttcccgacgagttgggcgac
cggcgcatcgtcctgcacagcccctggggccgggccgtccaccgggcctgggccgtggcc
atcgaaggatacctccgggcccgggggctgacccccgatacggtcgcggccgatgacggg
ttgatggtgcgactccccgcggaggcggacgtggaccccgacgagctctgccgcctcgga
ggccaggaccccacggcgctcgtgcaggcgtggctgcccacgagccacctggtggcccag
cggtttcgggaggcggcgacccgggccctgctcatcccgcgcagccaccgggcgcgccgc
caacccttgtggctgcagcgcctcagggccgccgatctgctggaccaggcgacgcggaca
ggggccgcgggcgtcttgctgcaggaggccatccgcgaggcggccacggaggacctcgac
gtggcgaccatggcgcggctcgtgcggggcctgcagcggggcgagatcgaggggcgggtg
gtggagcgccgcgtcccgtctcctctcgcggcggccatgctggccgcgttcacgcaatcc
tacctctacaggcccgacgcgcccaaggctcaggcccgcccgacgctgctgatgggcgcg
cccgaggagctgctccggcaggcggctgccgccgggaccctggagcacctggtggacgcc
cgggccctgcaggaggtggccgagcgccatcggttcccggcgtggctgggcgctcggccc
cccgacgggatcgagcggctggaggactggctgcgcttcgccggcgacatccgcgaccgc
gagctggaggaggccctcggctcggaggctccgtggcaggcctggatggaggcgctcgtg
cggcagggacgcgcgctgcgccggggtgccttgtgggtccatgccctgctggcccctgcc
ctcgaggccctggagtcggaggagctgcagcagcgggtggatgccctcgccgccctcctc
tctcaccggttgccatcgcggccgggcccctggcgcgtggaggaggtggccgagcgctac
gacgtcccgctcccggtggcgcgaggcgccctgggggtgctggaggctcgaggtctcgtg
ttgcgggccaccctccgggccggcgaggcgcccgtctacgtggcggtggcgggcttgctt
gaggcccgcaggcgcacgctccaacgggcccgcgccgaggccgcccctctccccatctcc
cgctaccaggcgttcgtcctgcgacgtcacggcgtggtgcgttcgcgtgagcgccccgag
accgacacggggacgcagctcctcacccggcgactctccactctggcgggcgtgcgggcc
cggtggtcggactgggtggccatgctggcggcccgcctcggtcgagacccgcgccccgat
ctggcccgggccatcgcttcgggccagatcggatgggccgtcgtggcgaccgccggggag
gaccagcgggagccccgggtgaccctcttccctcgggctcaggcgtccgccacgtacctg
gccggccctgccgtctccgagccccagctctccgccgaggcccgcgccgtcctggcgctc
ctgcagcgaggaggcagctggttcgggtgggaggtcgccagccaggccgggctcgacctg
gaagccgccgcccgagctctcctggagctggtacgcgccggcctcgcgggagccgagtcc
ttggagctgctcgaagccgccgctcgggcccccaggcgtgacgtgccggttgccgtcggc
tcgccaccgggggcgtaccgccgccccgcccgggcggtgcggcgtgcggcacgccgtgcc
ctctcccgtcgcgtcgtggccaagcccgacgtcggcctggtgcgcttctacctcgccggt
cacgaccctggcgccccggcccagcgggccgaggcctgggccgaggccctgctggcgcgg
tacgggatcgtcagccggagcgtggcggcagccgaggggatcccggtgccctggtcccac
gtcgcccaggcgctggagaccatggaggcgcaaggtcggatccagcgcgtctacgcggtg
gagggcctcgatggcgagcagttcgcccgcgaagccgacgccgaggctttgcgctcgggg
gcggacgacgccggcggcccgccggcccgcgggtgggccaccgcgagcgtggaccccgcg
gtgacggtcggctgggccgggcatccccctgcgtggtggccggcggggcctcccacgggc
ctggtcgccggggtcggcccccagcccatcctgcttttgcgtccggcctcgggcgggctg
tggcacgaccctggcgcgtgccccgaggcgctgggccaggctctggaggcggcggtgcgc
gtggcggggatggcctttcccgggcgtcggctcatcgttcgcaccgtccaggggatcccc
gtcccccacgaccgcgggcgcctggcgtggatacgggcggccgggttcgccgagggcccc
cggaccctcgaacgttgggtctag
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