Gulosibacter sediminis: M3M28_07540
Help
Entry
M3M28_07540 CDS
T08132
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gsd
Gulosibacter sediminis
Pathway
gsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M28_07540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsd03019
]
M3M28_07540
03009 Ribosome biogenesis [BR:
gsd03009
]
M3M28_07540
Enzymes [BR:
gsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M3M28_07540
Messenger RNA biogenesis [BR:
gsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M3M28_07540
Ribosome biogenesis [BR:
gsd03009
]
Prokaryotic type
rRNA helicases
M3M28_07540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
P-loop_SecA
adh_short
Motif
Other DBs
NCBI-ProteinID:
UQN13923
LinkDB
All DBs
Position
1630917..1632872
Genome browser
AA seq
651 aa
AA seq
DB search
MTHPTTDVPDDDSNSTTPSFSELGLSAPVLEAVTEIGYETPSPIQAATIPTLLEGRDVVG
LAQTGTGKTAAFALPVLSRIEGGAQKPQALVLSPTRELALQVAEAFESYASKLPEVRMVP
IYGGAAYGSQLNSLRRGVDVVVGTPGRIMDHLKRGSLDLSEIKFLVLDEADEMLKMGFAE
DVETILADTPKEKQVALFSATMPPQIRRISQQYLNDAAEITVKSQTATAKNISQRYLVVP
FHQKVDALTRILEVEEYDGLIIFVRTKSETEQLADKLRARGLSASAINGDIAQNQRERLV
SDLKAGKLDILIATDVAARGLDVERITHVVNFDIPTDPESYVHRIGRTGRAGRTGAAISF
VTPRERRLLNHIERITRQPMEQMRLPSVADVNETRLSRFDEAITSALEETSRIEAFRDII
DHYVRHHDVPESDVAAALAVVAQGDDPLLLDPDNDPMANQPDFSRDRRDNGRDNRDGGRR
ERRASNGNLQAYRIEVGKRNRVEPRQIVGALANEGGIGRDDIGAINIYPAFTIVELPRDL
SRDDLNRLGGIRVAGQNIDIRPDNGPAKRRRDDDRGGRGGYGGGGRGGYRGNRDGDDRGG
YRGDRDGDDRGWYRGGRGGGYNGNGRGGGYRDRDDRGGYGDRNQKRGGKRY
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaccccacgaccgacgtccccgacgacgactcgaactcaaccacgccgagcttt
tccgagcttggcctgagcgccccggtgctcgaggcggtcactgagatcggctacgagacc
ccgagcccgatccaggccgcgaccatcccgacgttgctcgagggccgcgacgtcgtgggc
ctcgcccagaccggaacgggtaagaccgccgcgttcgcactgcccgtgctctcgcgcatc
gagggcggcgcgcagaagccgcaggcgctcgtgctctcccccacccgcgagctcgcgctg
caggtggccgaggcattcgagagctacgcgtcgaagctccccgaggtgcgcatggtgccg
atctacggtggcgccgcctacggttcgcagctcaactcgctgcgccgcggcgttgacgtc
gtcgtcggcaccccgggccgcatcatggaccacctcaagcgcggcagcctcgacctcagc
gagatcaagttcctcgtgctcgacgaggccgacgagatgctgaagatgggcttcgcggaa
gacgtcgagacgatcctcgccgacacgcccaaggagaagcaggtcgccctgttctcggcg
accatgccgccgcagattcgccggatctcgcagcagtacctcaacgacgccgccgagatc
acggtgaagtcgcagaccgcgaccgcgaagaacatctcgcagcgctacctcgtcgtgccc
ttccaccagaaggttgacgcgctcacgcgcatcctcgaggtcgaggagtacgacggcctc
atcatcttcgtgcgcacgaagagcgaaaccgagcagctcgccgacaagctccgcgcccga
ggcctctcggccagcgccatcaacggcgacatcgcgcagaaccagcgcgagcgtctcgtg
agcgacctcaaggccggcaagctcgacatcctcatcgccaccgacgtcgccgcccgcggc
ctcgacgtcgagcgcatcacacacgtcgtgaacttcgacattcccaccgaccccgagtcg
tacgtgcaccgcatcggccgcaccggccgcgcgggccgcaccggcgccgcgatcagcttc
gtcaccccgcgcgagcgtcgcctgctcaaccacatcgagcgcatcacgcgccagccgatg
gagcagatgcgcctgccctcggtcgccgacgtcaacgagacccgcctgagccgcttcgac
gaggccatcacttcggcactcgaggagacctcacgcatcgaggccttccgcgacatcatc
gaccactacgtgcgtcaccacgacgtgccggagtcggacgtcgcagccgcactcgccgtc
gttgcccagggcgacgacccgctgctgctcgaccccgacaatgacccgatggcaaaccag
cccgacttctcgcgcgaccgccgcgacaacggccgcgacaatcgtgacggcggccgccgc
gaacgccgcgcgtcgaacggcaacctgcaggcctaccgcatcgaggtcggcaagcgcaat
cgcgttgagccccgccagatcgtcggcgcgctcgcgaacgagggcggcatcggccgcgac
gacatcggcgcgatcaacatctacccggcgttcaccatcgtcgagctgccgcgcgacctc
tcgcgcgacgacctgaaccgcctcggcggcatccgcgtcgccggtcagaacatcgacatt
cgccccgacaacggcccagcaaagcgtcgtcgtgacgacgaccgcggcggtcgcggtggt
tacggtggcgggggccgcggtggctaccgtggcaaccgcgacggcgatgaccgcggtggc
taccgtggcgaccgcgacggcgatgaccgcggctggtaccgcggcggtcgtggtggcggc
tacaacggcaacggccgcggtggcggctaccgtgaccgcgacgaccgtggcggctacggc
gaccgcaaccagaagcgcggcggcaagcgctactag
DBGET
integrated database retrieval system
