Gulosibacter sediminis: M3M28_08420
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Entry
M3M28_08420 CDS
T08132
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gsd
Gulosibacter sediminis
Pathway
gsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M28_08420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsd03019
]
M3M28_08420
Messenger RNA biogenesis [BR:
gsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M3M28_08420
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
UQN14079
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Position
complement(1816534..1818237)
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AA seq
567 aa
AA seq
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MTNEITESIPVQLPPLARDTMRIIPHGGLGEVGRNMTSFELNGKIFIIDVGVLFPESTQP
GVDLILPDIEIILDRLDDVVGIFLTHGHEDHIGGVPYLLKRKPDIPLIGSPLTLALVEAK
LKEHRITPYTLTVHEGDVEEFGPFRAEFWAVNHSIPDSLGVHVTSKAGSFIHTADLKMDP
TPMDGRLTDLRALSRFGEQGVDLFLCDSTNAEVAGHSGSEMSVAPAINEAVRTSTGRVIV
SSFASHIHRVQHVINAAAANNRKIALVGRSMVRNMGIALDLGYLHAPKGLIIDYKKALDL
PRDRVVFVCTGSQGETLAVLNRIAQGDHAIEVGEGDRVVLASSLVPGNEVPVSNMINNLM
KAGADVVHKGNARVHVSGHGFADELLAAYNVIKPKYAMPVHGEFRHLTANANIAVKSGVD
RDHTIVTENGGVIDLAGGVPKKVGEVPVGFVYVDGKTVGTVTEDDLKDRLVLSSEGFISI
YTVIDPATGKIIAGPEFHARAFAPDDRVFEPLVPQVRKALEDALDDGVRDTYRLSQAVRR
VVGRWAGTKQRRRPMIVPVVTFANTGE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacgaaataactgaatcaatcccggtgcagctaccgccactcgcccgcgacacg
atgcggatcatcccgcacggcggtctcggcgaggtcggccgcaacatgacgtcgttcgag
ctcaacggcaagatcttcatcatcgacgtcggcgtgctgttccccgagtcgacgcagccc
ggcgtcgacctgatcctgcccgatatcgagatcatcctcgatcgcctcgacgacgtcgtt
ggcatcttcctcactcacggccacgaagaccacatcggcggcgtgccgtacctgctcaag
cgcaagcccgacattcccctcatcggctcgccgctcaccctcgcgctcgtcgaggcgaag
ctcaaagaacaccgcatcacgccgtacacgctcacggtgcacgagggcgacgtcgaggag
ttcggcccgttccgtgctgagttctgggccgtgaaccactcaattcccgactcgctcggc
gtgcacgtcacgtcgaaggccggcagcttcatccacaccgccgacctcaagatggacccg
acgccgatggatgggcgactcaccgacctgcgcgcgctcagccgcttcggtgagcagggc
gtcgacctgttcctctgcgactcgacgaacgccgaggttgcgggccactcgggctccgag
atgtcggtcgcccccgcgattaacgaagccgtccgcacgagcacgggccgcgtcatcgtc
tcgagcttcgcgagccacattcaccgagtgcagcacgtcatcaacgccgccgccgcgaac
aaccggaagatcgcgctcgtcggccgctcgatggtgcgaaatatgggcatcgcgctcgac
ctcggctacctgcatgcgcccaagggcctcatcatcgactacaagaaggcgctcgacctg
ccgcgcgaccgcgtcgtgttcgtctgcaccggctcgcagggcgagacgctcgcggtgctc
aaccgcattgcgcagggcgaccacgcgatcgaggtgggggagggcgaccgcgtcgtgctc
gcctcgagcctcgtgccgggcaacgaggtgcccgtgtcgaacatgatcaataacctcatg
aaggctggcgccgacgtggtgcacaagggcaacgcccgcgtgcacgtctcgggccacggc
ttcgccgacgagctgctcgcggcgtacaacgtcatcaagccgaagtacgccatgccggtg
cacggcgagttccgccacctcaccgcgaacgcgaacatcgccgtcaagtcgggggtcgac
cgcgaccacacgatcgtcaccgaaaacggcggcgtcatcgacctcgccggcggcgtgccg
aagaaggtcggcgaggtgccggtcggcttcgtctacgtcgacggcaagaccgtcggcacc
gtcaccgaggacgacctcaaggaccgcctcgtgctctcctccgagggcttcatctcgatc
tacaccgtcatcgacccggccaccggcaagatcatcgcgggccccgagttccacgcccgc
gcgttcgcgcccgacgaccgcgtcttcgagccgctcgtgccgcaggtgcgcaaggcgctc
gaggatgcgctcgatgacggcgtgcgcgacacctaccgcctctcgcaggccgtgcgccgc
gtcgtcggccgctgggccggcacgaagcagcgtcgccgcccgatgatcgtgcccgtcgtt
accttcgcgaacacgggcgaataa
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