Gulosibacter sediminis: M3M28_09070
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Entry
M3M28_09070 CDS
T08132
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gsd
Gulosibacter sediminis
Pathway
gsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M28_09070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsd03019
]
M3M28_09070
03009 Ribosome biogenesis [BR:
gsd03009
]
M3M28_09070
Enzymes [BR:
gsd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M3M28_09070
Messenger RNA biogenesis [BR:
gsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M3M28_09070
Ribosome biogenesis [BR:
gsd03009
]
Prokaryotic type
rRNA processing factors
M3M28_09070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
XRCC4_CC
Motif
Other DBs
NCBI-ProteinID:
UQN14198
LinkDB
All DBs
Position
complement(1965445..1968720)
Genome browser
AA seq
1091 aa
AA seq
DB search
MTVDNHNNDSNNSNDEANQVDDATQPQTEATSDAVDAAATDAESQPAPDAEVDETAEEAD
QAAGETEAADAGTAAESNEGEAAADVTSDDAKTDADAEATETADSAETSDADSAVAAKAD
AAEGDDAAATADDSAKGDASADATSKAEDTDKAGDAEKADDTAKAADAEGADDATKADDA
EKPEDARDPRIPEVITQRTLFFLAPDLPPLPEAPRGRRNEPREPQRDDSNDDGDDNETGS
GKRRRTSRRGRRGGEQEREQREPQRRDRASDRGRDTSDFDDDTDDEVIDEPQAVKGSTRL
AAKRARRRESRELGRRRTVVTESEFQARRESVDRKMLVRAKDGRVQIGVLEDNILVEHYV
ARNEDVSLIGNVYLGRVQNVLPSMEAAFVDIGEARNAVLYSGEVDWSAAKLGPNTARKIE
NALKPGDKVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGNTLNGISRKLPETERTRLK
KILKEVLPDGVGVIVRTAAEGATEEQLQRDVERLTRQWEDIQKQVASAGKGPKTLHAEPD
MLIKIIRDVFNEDFHQLIIQGNSELETIKTYLGQVAPDLLERVEKYTGDDIFVEYKVNDM
IDKALSRKVWLPSGGSLVIDRTEAMTVIDVNTGKFVGSGGNLEETVTKNNLEAAEEIIRQ
LRLRDIGGIIVIDFIDMVLETNRDLVHRRLVEGLSRDRTKHQVAEVTSLGLVQMTRKKIG
LGLLETFSEPCAACAGRGVVVHSHPVNHGGGNSNQSKGRSQSRRGNNKGQNDNGRNQNQG
QNQNQTQNGSNSGGTHEITDDARNALTKIAASTMVSAKDDEAVREAAEKLADAAAAAASG
KPAADVLAAGGEASNDNDSNGEGRRSRRSRRGGRGRNRNVEQQGDESQNSNAEQADGQQD
ARDSRDARDSRDSAQQDASAGDRNGNDRSANDRGASDRTNSDRSGSDRNATDRTDAATAA
QHATKAEEAPRASKPRRRRVSTGTVTADASSSEARRESALSIELPEAKEPAPKAELKVDA
SLSLASLDAALDSLAGTSAEPSEPAAEPAEPKEQPQAAPQASAEPAPAAEAPKTSSPKRR
RRITTGPITGE
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
gtgacggtggacaaccacaacaacgattccaataactccaacgacgaagcgaaccaggta
gacgacgccacgcagcctcagaccgaggcgacgagcgacgcagtcgacgccgcagcgacc
gacgcagagtcgcagcccgcgcccgacgccgaggttgacgagacggccgaggaagctgac
caggctgccggcgagaccgaagccgccgatgcaggcactgccgccgagtcaaacgagggc
gaagctgcagccgacgtgacttcggacgacgcaaagaccgacgccgacgcagaggcgacc
gagaccgccgactcggctgagaccagcgacgccgacagcgcagtcgctgccaaggctgac
gccgcagagggtgacgacgcggccgcaactgctgacgacagcgcgaagggcgatgcctcg
gcagacgctacgtcaaaggccgaagacaccgacaaggctggcgacgcagagaaggccgac
gacaccgcaaaggcagccgacgccgagggcgctgacgacgccaccaaggccgacgacgcc
gaaaagcccgaggacgctcgcgacccgcgcatccccgaggtcatcacgcagcgcaccctc
ttcttcctcgcgcccgatctgccgccgctgcccgaggcaccgcgcggccgccgcaacgaa
ccgcgcgagccgcagcgtgacgactcgaacgacgacggcgacgacaacgagaccggcagc
ggcaagcgccgccgcacctcgcgccgcggccgccgcggtggcgagcaggagcgcgagcag
cgcgaaccccagcgccgcgaccgcgcgagcgaccgaggccgcgacaccagcgacttcgac
gacgacaccgacgacgaggtcatcgacgagccgcaggccgtcaagggctcgacccgtctc
gccgcgaagcgcgcccgccgccgcgagagccgcgagctcggccgccgccgcaccgtcgtc
accgagagcgagttccaggcccgccgcgagtcggtcgaccgcaagatgctcgtgcgcgcc
aaggacggccgcgtgcagatcggcgtgctcgaagacaacatcctcgtcgagcactacgtc
gcccgcaatgaagacgtctcgctcatcggcaacgtctacctcggccgcgtgcagaacgtg
ctgccgagcatggaggccgcgttcgtcgacatcggcgaggcccgcaacgccgtgctctac
tcgggcgaggtcgactggagcgccgcgaagctcggccccaacacggcccgcaagatcgag
aacgccctcaagcccggcgacaaggtgctcgtccaggtcacgaaagacccggtcggccac
aagggtgcccgcctgacgagccagatctcgctgcccggccgctacctcgtgtacgtgccc
ggcaacacgctcaacggcatcagccgcaagctgcccgagaccgagcgcacgcgcctcaag
aagatcctcaaggaggtgctgccggacggcgttggcgtcatcgtgcgcaccgccgccgag
ggcgcgactgaggagcagctgcagcgcgacgttgagcgcctcacgcgccagtgggaagac
atccagaagcaggtcgcctcggcaggcaagggcccgaagacgctccacgccgagcccgac
atgctcatcaagatcatccgcgacgtcttcaatgaggacttccaccagctgatcatccag
ggcaactccgagctcgagacgatcaagacctacctcggtcaggtcgcccccgacctgctc
gagcgcgtcgagaagtacaccggcgacgacatcttcgttgagtacaaggtcaacgacatg
atcgacaaggcgctcagccgcaaggtctggctgccgtcgggtggttcgctcgtcatcgac
cgcaccgaggcgatgacggtcatcgacgtcaacaccggcaagttcgtcggctcgggtggc
aacctcgaagagaccgtcacgaagaacaacctcgaggcggccgaagagatcatccgccag
ctgcgcctgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtgctcgag
acgaaccgagacctcgtccaccgccgcctcgttgagggcctctcgcgcgaccgcacgaag
caccaggtcgccgaggtgacgagcctcggcctcgtgcaaatgactcgcaagaagatcggt
cttggcctcctcgagaccttctcggagccctgtgctgcctgcgccggccgcggcgtcgtc
gtgcattcgcacccggtcaaccacggcggcggcaacagcaaccagtcgaagggccgctcg
cagtcgcgccgcggcaacaacaagggccagaacgacaacggtcgcaaccaaaaccagggc
caaaaccagaaccagacgcagaacggttcgaacagcggcggcacccacgagatcaccgac
gacgcccgcaacgcgctgacgaagatcgccgcgtcgaccatggtgtcggcgaaggacgac
gaggcggtgcgcgaggcggctgaaaagctcgcggatgcggctgccgcggcagcgtccggc
aagccggccgccgatgtgctcgcggccggtggcgaagcgtcgaacgacaacgactcgaac
ggtgagggccgtcgttcgcggcgctcgcgccgcggcggccgcggtcgcaaccgtaacgtc
gagcagcagggcgatgagtcgcagaactcgaacgccgagcaggccgatggccagcaggat
gcgcgcgacagccgcgacgcccgcgacagccgcgattcggcccagcaggatgcgtcggcc
ggtgaccgcaacggcaacgaccgctcggcaaacgaccgcggcgccagcgaccgcaccaat
agcgaccgcagcggcagtgaccgcaatgcaaccgaccgcactgacgccgccaccgccgcg
cagcacgcgacgaaggccgaggaggcgccccgcgcatccaagccgcgtcgccgccgcgtg
agcacgggcacggtgacggctgacgcctcgagcagcgaggcgcgccgcgagtcggcgctc
tcgattgagctgcccgaagcgaaggagccggcgccgaaggccgagctgaaggtcgatgcg
tcgctgagcctcgcatccctcgacgccgccctcgactcgctcgcgggcaccagcgccgag
ccgagcgagcccgccgccgaaccggccgagcccaaggagcagccacaggccgcgccgcag
gccagcgccgagccggctccggccgccgaggcgccaaagaccagctcgccgaagcgtcgt
cggcgcatcacgacgggcccgatcacgggggagtag
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