Gulosibacter sediminis: M3M28_09970
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Entry
M3M28_09970 CDS
T08132
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gsd
Gulosibacter sediminis
Pathway
gsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M3M28_09970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsd03021
]
M3M28_09970 (rpoC)
03400 DNA repair and recombination proteins [BR:
gsd03400
]
M3M28_09970 (rpoC)
Enzymes [BR:
gsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M3M28_09970 (rpoC)
Transcription machinery [BR:
gsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M3M28_09970 (rpoC)
DNA repair and recombination proteins [BR:
gsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M3M28_09970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
Motif
Other DBs
NCBI-ProteinID:
UQN14371
LinkDB
All DBs
Position
complement(2158044..2161925)
Genome browser
AA seq
1293 aa
AA seq
DB search
MIDATKFDSISIGLATSEDILGWSRGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIICERCGVEVTKSAVRRERMGHIKLAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVVEIDEEGRRDDLTDLEKEKNLEVDTRGKQRDSQINERMAQLEKD
LEALEEEGATADQKKKTKDAAEKEMARIRKEVDNDIAQIERVYEGFKNLKVGELKPDDAD
FAELIDRYGDYFEAYMGAEAIKRRLQDFDLATEAELLRDQIQNGKGQKKIRAIKRLKVVT
AFLQTENKPAAMVLDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLMRLLEL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLQMHQCGLPKQMALELFKPYVIKRLIDLGHASNIKAAKRAVERAK
PEVWDVLEEVIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLACSAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMVAGLYHLTFLREDAVGAGR
VFGSVAEAIMAQDEGTLHLNAPVKIRLEGVTFHPAEAPEGFVEGRPVVKETTLGRALFNE
LLPDTYPYLEDVMTKGRLSGVVNYLAERYDKDVVAATLDRIKDSGFYWATRSGISLSVSD
VVIPDTKAEIVAETETKVAQLREDYQMGLSTQQEYRDQTIALWEEATERVAADTREQFPE
TNSIHRMVTAGANGNWLQVRQIAGMRGIVANPKGEKIARPIIHSYREGLTVLEYFSSTHG
ARKGLADTALKTADSGYLTRRLVDVSQDVIIREDDCGTHKGIVLPIAQTDKDGNVTLADN
VENSVYARTLATDVTNAAGDVLAHAGESVGDVLIERLLGEGVREVTIRSVLSCESQVGVC
AKCYGRSMASSELADLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIAGAADITQGLPRVQE
LFEARTPKGAAPLAKVAGTVTFQDTERQRKIVLEPDNKDDETLTYPVSRFAEFLVEDGDH
VEPGQQLVEGPLDPKDVLEVLGTTAVQKYLVGGVQDVYNSQGVPIHDKHIEVIVRQMLRK
VTINDSGETDMLPGELVDRQRFQATNRQSVAEGRRPASGRPEVMGITKASLATESWLSAA
SFQETTRVLTQAAMEQKTDPLLGLKENVIIGRLITAGTGMPEYAEQVVEPTEEARNERYP
YAEADALDFSNDLSFADFDSFSGNDDFGSIDFN
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgcaactaagttcgacagcatcagcatcgggctggcaactagcgaggacatc
ctcggttggtcgcgtggcgaggtaaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggtctgttcggtgagcagatcttcggcccctcgcgcgactgggagtgc
gcctgcggtaagtacaagcgcgtgcgctttaagggcatcatctgtgagcgctgcggcgtt
gaggtgacgaagtcggcggtgcgccgtgagcgcatgggccacatcaagctcgccgcgccc
gtgacgcacatctggtacttcaagggtgttccttcgcgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtggtcgagatcgac
gaagagggtcgtcgtgacgacctgaccgacctcgaaaaggagaagaacctcgaggtcgac
acccgcggcaagcagcgcgattcgcagatcaacgagcggatggcgcagcttgagaaggac
ctcgaggcactcgaggaagaaggcgcaaccgccgaccagaagaagaagaccaaggatgcg
gccgagaaggaaatggctcggattcgcaaggaggtcgacaacgacatcgcgcagatcgag
cgcgtctacgagggcttcaagaacctgaaggttggcgagctcaagccggacgacgccgac
ttcgccgagctcatcgaccgctacggtgactacttcgaggcctacatgggcgccgaggcg
atcaagcgccgcctgcaggacttcgacctcgccaccgaggccgaactgctgcgcgaccag
atccagaacggcaagggtcagaagaagatccgcgccatcaagcgactcaaggtcgtcacg
gcgttcctccagaccgagaacaagccggccgcgatggtcctcgacgtgatccccgtgatc
ccgccggagctgcgcccgatggtgcagctcgatggtggccgcttcgcaacgagcgacctc
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgcctcatgcgtctgcttgagctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgca
ctgttcgacaacggccgccgcggtcgccccgtcaccggtaccggtaaccgtgccctcaag
tccctcagcgacatgctgaagggtaagcagggtcgtttccgccagaacctgctcggtaag
cgcgtcgactactcgggtcgttcggtgattatcgttggcccgcagctgcagatgcaccag
tgcggtctgccgaagcagatggcactcgagctgttcaagccgtacgtgatcaagcgcctt
atcgacctcggccacgcgagcaacatcaaggccgcgaagcgcgccgttgagcgcgccaag
cccgaggtgtgggacgtcctcgaagaggtcatccgcgagcgccccgtgctgctgaaccgt
gcgcctacgctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggtaag
gcgatccagctgcacccgctcgcttgctcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctttcggtcgaggcacaggccgaggcccgcgtgctcatgctc
gcgtcgaacaacatcctcaagccgtccgacggccgccccgtgaccctgccttcgcaggac
atggttgccggtctgtaccacctcacgttcctccgtgaggatgcggtcggcgccggccgc
gtgttcggctcggttgccgaggcgatcatggcgcaggacgagggcacgctgcacctcaac
gctcccgtcaagattcgcctcgagggcgtcacgttccacccggccgaggcccccgagggt
ttcgtcgagggtcgtccggtcgtcaaggagacgacgctgggtcgcgcgttgttcaacgag
ctgctgcccgacacctacccgtacctcgaggacgtcatgaccaagggtcgtctctcgggc
gtggtgaactacctcgccgagcggtacgacaaggacgtagtggcagcgacgcttgaccgc
atcaaggactcgggcttctactgggccacgcgttcgggcatctcgctgtcggtctccgac
gtcgtgattcccgacaccaaggccgagatcgtcgccgagaccgagaccaaggttgcgcag
ctgcgtgaggactaccagatgggtctgtcgacccagcaggagtaccgcgaccagaccatc
gcgctgtgggaggaggcgaccgaacgcgtcgccgccgacacccgcgagcagttccccgag
accaactcgattcaccgcatggtgacggctggtgcaaacggtaactggctgcaggttcgt
cagatcgccggtatgcgcggcatcgtggccaacccgaagggtgagaagatcgcccgcccg
atcattcactcgtaccgcgagggtctgaccgtactcgagtacttctcgtcaacccacggt
gcgcgaaagggtctggccgacaccgcgctcaagaccgccgactcgggttacctcacgcgt
cgtctcgtcgacgtgtcgcaggacgtcatcatccgtgaagacgactgcggtacccacaag
ggcatcgtgctgccgatcgcgcagaccgacaaggacggcaacgtcacgctcgcggacaac
gtcgagaactcggtctacgctcgtacgctcgcgaccgacgtcacgaacgctgccggcgac
gtgctcgcccacgcgggcgagtcggtcggtgacgtgctcatcgagcgcctgctcggcgaa
ggcgtccgcgaggtcaccatccgttcggtgctgtcctgcgagtcgcaggtcggtgtctgc
gccaagtgctacggccgttcgatggcgtcgagcgagctcgccgacctcggcgaggccgtc
ggcatcatcgcggctcagtcgatcggtgagcccggtacccagctgaccatgcgtaccttc
cacaccggtggtatcgccggtgcggccgacatcacgcagggtctcccgcgtgtgcaggag
ctcttcgaggcgcgtaccccgaagggtgcggcgccgctcgcgaaggttgccggtacggtg
acgttccaggacaccgagcgccagcgcaagatcgtgctcgagcccgacaacaaggacgac
gagacactcacctacccggtgtcgcgcttcgccgagttccttgtcgaggacggcgaccac
gtcgagcccggccagcagctcgttgagggtccgctcgacccgaaggacgtgctcgaggtg
ctcggcaccaccgcggtgcagaagtacctcgtcggtggtgtgcaggacgtctacaactcg
cagggtgtgccgatccacgacaagcacattgaggtcatcgtgcgccagatgctgcgcaag
gtcaccatcaacgactcgggcgagaccgacatgctccccggcgagcttgtcgaccgtcag
cgcttccaggcaaccaaccgccagtcggttgccgagggccgccgccccgcgtcgggtcgt
cccgaggtcatgggtatcaccaaggcctcgctcgcgaccgagtcgtggctgtcggccgcg
tcgttccaggagaccactcgcgtgctgacccaggccgcgatggagcagaagaccgacccg
ctgctcggcctcaaggagaacgtcatcatcggtcgtctcatcaccgccggtaccggtatg
cccgagtacgccgagcaggttgttgaacccaccgaagaggcgcgcaacgagcgctacccg
tacgccgaggccgacgcgctcgacttcagcaacgacctgtcgttcgctgacttcgactcg
ttctcgggtaacgacgacttcggcagcatcgacttcaactag
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