Globicatella sanguinis: CYJ72_000080
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Entry
CYJ72_000080 CDS
T09094
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gsg
Globicatella sanguinis
Pathway
gsg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gsg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CYJ72_000080 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsg03021
]
CYJ72_000080 (rpoD)
Transcription machinery [BR:
gsg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CYJ72_000080 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DUF3642
PfUIS3
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
WIK66548
LinkDB
All DBs
Position
18687..19832
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AA seq
381 aa
AA seq
DB search
MAEEKDNLKETTNEVSVSYEEAVKRLIAERKLIGQIKYDDLSDQIASKYGLDADDMNKLI
QKVEDNGIAVVGEDGGPTKQQMINEGDINVDEPEPTAVEKAAATKLKVSDPVRMYLKEIG
RVPLLSGEEEVELAIRISQGDELAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMG
LMKAVEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLL
QDLGREPTPEEIGAEMDLSTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEAAMSP
ETFTSSALLREQLEDVLDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIE
AKALRKLRHPSRSNQLKDFLE
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagagaaagataatcttaaagaaacaactaatgaagttagcgtctcctatgaa
gaagcggtaaagcgattaatcgctgaacgtaaattaattggccaaattaaatacgatgat
ttatcagaccaaatcgcaagtaagtatggtttggatgctgatgatatgaataaattaatt
caaaaagtagaagataatggaattgcggttgttggtgaagatggtggaccaaccaaacaa
caaatgatcaacgaaggagatattaatgttgatgaacctgaaccaactgcagttgaaaaa
gccgctgcaactaaattaaaagtaagtgaccccgttcgtatgtacttaaaagaaatcggt
cgcgttccattattaagtggtgaagaagaagttgaattagcgattcgtattagtcaaggt
gatgaactggcaaaacaagaattagccgaagcaaacttacgtttggtagtttcaattgca
aaacgttatgttggccgtgggatgcaattcttagaccttattcaagaaggtaacatggga
ctaatgaaagcagtagagaagtttgaccatactaaaggttttaaattctcaacatacgca
acatggtggattcgtcaagcaattacccgtgcaattgctgaccaagccagaacaatccgt
atcccagtacatatggtggaaacaattaataaattagtacgtgttcaacgtcaattatta
caagatttaggacgtgaaccgacaccagaagaaattggggcggaaatggacctttcaaca
gaaaaagttcgtgaaatcttgaagattgctcaagaacccgtttctttagagacgccaatt
ggtgaagaagatgattcccatttaggagactttattgaagacgaagcagcaatgagccca
gaaacttttacttcttctgccttattgcgtgagcaattagaagatgttttagatacatta
actgaccgtgaagagaatgtattacgtttacgttttggtttagatgatgggaatattcgc
actttagagcaagtgggtaaagtatttggcgttactcgtgaacgtattcgtcaaattgaa
gccaaagctttaagaaaattacgtcacccaagtcgttctaatcaattgaaagacttttta
gagtag
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