Globicatella sanguinis: CYJ72_004685
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Entry
CYJ72_004685 CDS
T09094
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gsg
Globicatella sanguinis
Pathway
gsg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYJ72_004685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsg03400
]
CYJ72_004685 (mfd)
Enzymes [BR:
gsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYJ72_004685 (mfd)
DNA repair and recombination proteins [BR:
gsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CYJ72_004685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
MFD_D3
T1R_D3-like
AAA_7
Motif
Other DBs
NCBI-ProteinID:
WIK67361
LinkDB
All DBs
Position
complement(1082266..1085799)
Genome browser
AA seq
1177 aa
AA seq
DB search
MINYLNKEPFSKVVQELNKFQAPESQQLVTGVDDSARAVLWAQLFNEQPRQLLIVEPVAT
HLTQLVDDLQQLLPDYPVHLFPVEEAMPIEFSMASFDNQAMRVEALTALASGKPCVIVAS
GLALRKRLTPVSIWKDAQLTLSLGDDIERFELEKRLNYLGYTRESMVQAPGEYSIRGSII
DFYPLNYEYPVRLDFFDIELDSIRFFDAETQESIDNAETIQLLPVKDVLFSLEEQQAVLS
QIQADLKKRVKKIKDDETQEQVMKGMSDHLERLQHGEPLQYHLAYLEYRDAKGTTLVDYL
ADNGTLIINELDRIQNRERQSIEEDLFWIEQEMTKGNLLPGLSIKVEATEQIKNAKQPKI
YCSVIQRGLGKLTFRAIHHIHYRSMNQFFNQMPLVKTEIDHWLKQENIVQVVLPTLEEAR
KAQARFEEYDIQPVVIQDTATLSPHAVNIVVGNLTNGFELPVAKWVVLTGKELFNQVKRR
SVRKQTLSNAERIKSYSELEIGDYVVHINHGIGQYTGVETIEINGVHRDMVSVVYQDNSR
ILLPVDQIQLLQKYVASESKVPKLNKLGSAEWQKTKAKIATKIEDIADELIELYAKRENQ
KGYAFEPDTPEQAAFENAFSYVETDDQLRSTAEIKADMERERPMDRLLVGDVGYGKTEVA
MRAAFKAVMDGKQVAFLVPTTILAQQHYNTLIERFVDFPVNIGLLSRFVTQKQQKETITG
LALGNIDIVVGTHRVLSKDIEFADLGLLVVDEEQRFGVKHKERLKQLKSQVDVLTLTATP
IPRTLHMSMIGVRDLSVIETPPNDRFPVQTYVMERNEAAIKSAVEREMARGGQCFYLYNR
VATIDQRAQELQELVPEARVAVAHGQMTEVQLETILIDFINGAYDILVTTTIIETGVDIP
NANTLFVDMADHMGLSTLYQLRGRVGRTNRVAYAYLMYEPFKQLSEISAKRLQAIQEFTE
LGSGFKIAMRDLSIRGAGNLLGKQQSGFIDSVGFDMYSQMLKEAVDVKRGLKKPVSEETS
ENIEWDLMIDAYIPSLYISDERQKIAIYKSIQQVDSEEAYRQLQDQLIDRFGEFPDEVSD
LLEIALIKHYGLLAGVEQIKQKNDQVEVTFNPRMTLKLQGATIFELLQDIPVKIKVAVEN
EQLKVTLQVRGIPSYQWLGYLKNLTQAIAERNKVKEQ
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgataaattatttaaataaagaaccattttcaaaggttgttcaggagctgaataagttt
caagctccggaaagccaacaattagtaacgggggttgatgacagcgctcgggctgttttg
tgggcacaattattcaacgaacaaccaagacaattattaatcgttgaacccgttgcgact
catttgacccaattagttgatgatttacaacagttattgcctgattatccggttcattta
tttccggtagaagaagccatgccgattgaattttcaatggcttcatttgataatcaagcg
atgcgcgttgaagctttaacggctctagcaagtggtaagccatgtgtgattgtcgcatct
ggtttggcattgagaaaaagattaacgccggtatctatttggaaagatgcccaactaaca
ttaagcttaggagatgatattgagcgattcgaacttgaaaagcgtttaaattacttaggt
tatacgcgtgagtcaatggtgcaagccccgggcgaatatagtatccgtggtagtattatt
gacttctatccattaaattatgaatatccagttcgtttagatttctttgatatagaatta
gattccatccgtttctttgatgctgaaacccaagaatcgattgacaatgctgagacaatt
caattattacctgttaaagatgttttgttcagtttagaagaacaacaagcagtcttatct
caaattcaggctgatttaaaaaaaagagtgaaaaaaatcaaagatgatgagactcaagaa
caagttatgaaagggatgagcgatcatcttgaacgtcttcaacatggggagccgttgcaa
tatcatttggcttacttagaataccgtgatgcgaagggaaccacccttgtagattattta
gctgataatggcacccttattattaatgaattagatcggattcaaaatcgtgagcgtcaa
tcgattgaggaagatttattttggattgaacaagaaatgactaaagggaatttattgcct
ggtctttctattaaagtggaagcgacagaacaaataaaaaatgccaaacagcctaaaatt
tattgttcggtcattcaacgtggattaggtaaattaacgtttagagccattcatcatatc
cattatcgcagtatgaaccaattctttaatcaaatgccattggttaaaacagaaatcgat
cattggttgaaacaagaaaatattgtgcaggtcgttttacctacacttgaagaagctaga
aaagcacaggctcgttttgaagaatatgacattcaaccggttgtcattcaagatacagcc
acccttagtccgcatgcggtcaatatcgtagtgggtaatttaaccaatggatttgaatta
ccggttgctaaatgggtagtgttaactggtaaagaattattcaatcaggttaagcgtcgc
agtgtgcgcaagcaaactttatccaatgctgaacgtattaaaagctattcagagcttgaa
attggagactatgtcgtccatattaatcatgggattgggcagtataccggggtagaaacc
attgaaatcaatggcgtccatcgcgatatggtgtcggtcgtctaccaagacaactcgcgt
attttattacctgttgatcaaattcaactattacaaaaatatgtcgcatcagaatccaaa
gtacctaagttaaataaattagggagcgctgaatggcagaaaacgaaagctaagatagcg
actaaaattgaagacattgcggatgaattaattgagttatacgctaaacgtgaaaaccaa
aaaggctatgcatttgaacctgatacaccagagcaagcagcgtttgaaaatgcttttagt
tatgtagaaacagatgatcaattacgttctacggctgaaattaaagccgatatggaaaga
gaacggccaatggatcgcttattagtcggtgatgttggctatggtaagaccgaagtcgca
atgcgagcggcttttaaggccgtaatggatggtaaacaagtggcctttctggtaccgact
actattttagcgcaacaacattataatactttaattgaacgtttcgttgactttcctgtt
aatataggccttttaagtcgcttcgttacgcaaaagcaacaaaaagaaacgataacagga
ttagctttaggtaacatcgatattgtcgttggtacgcatagagttttatcgaaagatatt
gaatttgccgatttagggctattagtagtcgatgaagagcaacgttttggggtaaaacat
aaagaacgcttgaaacaattaaaatctcaagtcgatgtcttaaccttaaccgcaaccccg
ataccaagaaccttgcatatgtcgatgattggtgtgcgtgacttatcggttattgagaca
ccaccaaatgatcgtttccctgtgcaaacttatgtgatggagcgaaatgaagcagcgatt
aaatcggccgttgaacgtgaaatggcccgtggtggacagtgtttttatttatataatcgg
gtcgcaaccatcgatcaacgtgcccaagaattacaagaattagtaccagaggctcgcgtt
gcggttgcgcatggtcaaatgacagaagtgcaattagagaccatcttaatcgattttatc
aatggtgcgtatgatatattagtcacgaccacgattattgaaaccggtgtggatattccc
aatgcgaataccttatttgtcgatatggctgaccatatgggactttcaactttgtatcaa
ttaagaggacgtgtgggtcgaaccaaccgggttgcatatgcctacttaatgtatgaacct
tttaaacaattaagtgaaatcagtgccaaacgattacaagcgattcaagaatttactgaa
ttggggagtggctttaaaattgcgatgcgtgacttatcgattcgtggcgctggtaattta
ttagggaagcaacaatcaggctttatcgattctgtcggttttgatatgtattcacaaatg
ttaaaagaagccgtggatgttaaacgtggcttgaagaaacctgtctcagaggaaacatca
gaaaatattgagtgggatttaatgatcgatgcttatataccatctttatatattagtgat
gaacgtcagaaaattgctatttataaatccattcaacaagtggattctgaagaagcttat
cgtcaattacaagatcagttgattgaccgttttggtgaatttcctgatgaagtgagtgat
ttattagagattgccttaattaagcattatgggttattagctggcgttgaacaaattaag
cagaaaaatgatcaagtggaagtgacctttaatccgcgcatgacactgaaattacaaggg
gcaaccattttcgagttattgcaagacattccggttaaaattaaagtagcggtagaaaat
gaacagctgaaggtaaccttacaagttcgaggcataccaagttatcaatggttaggttat
ttgaaaaacttaacccaagccattgctgaaagaaataaagtaaaggagcaatag
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integrated database retrieval system
