Globicatella sanguinis: CYJ72_007560
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Entry
CYJ72_007560 CDS
T09094
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gsg
Globicatella sanguinis
Pathway
gsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYJ72_007560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsg03019
]
CYJ72_007560
03009 Ribosome biogenesis [BR:
gsg03009
]
CYJ72_007560
Enzymes [BR:
gsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYJ72_007560
Messenger RNA biogenesis [BR:
gsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CYJ72_007560
Ribosome biogenesis [BR:
gsg03009
]
Prokaryotic type
rRNA helicases
CYJ72_007560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
DUF4364
Helicase_RecD
CobA_CobO_BtuR
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WIK65786
LinkDB
All DBs
Position
1685419..1687035
Genome browser
AA seq
538 aa
AA seq
DB search
MKFSELNLSPLLVTSLKELGFEEPTPIQQQAVPVALEGKDLIGQAQTGTGKTAAFGLPML
NKLNSQTQSVQGLVIAPTRELAIQVQEELFRLGKEQRARVYVVYGGAPIGNQINRLKRNA
PQIVVGTPGRILDLMRRKALKLDELQTLVLDEADEMLNMGFIDDIRAIIETTPETRQTLL
FSATMPKEIRNLADQFLKEPAHIKIETKQITADLIEQFFIKCRDDEKFDVLTRLLDVQSP
KQAIVFCRTKKRVDEVGRGLSLRGFNAELIHGDITQQKRTTVINQFRNGEIELLVATDVA
ARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGNEGASITFVTQNEMPYLRTIETLTR
KAMTPMKPPTVQEAQWGQVQQLIDQVNEILEEGNAQQHRNTAKLLLEHYQANDLVTALLG
TIINDNSNIEVQISPQRPLPNAQHKKGYKSGNKGRGGRRDNRRRDGGSRRDGGKYGGERR
EGGRNRDRRQDRDQDFKRKDKKKNPKFDKNTRGKDQGKSNKSSKKVNINKNFKMMKKD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttcagaattaaatttatcaccattattagtaacatcacttaaagagttaggg
tttgaagaaccaactccgattcaacaacaagctgtgcctgtggcattagaaggaaaagac
ttaattggtcaagctcaaaccggaaccggtaaaacagcggcctttggtttaccaatgtta
aataaattaaatagtcaaacccaatcggttcaaggcttagttattgcaccgacgcgtgaa
ttagcgattcaagtacaagaagaattattccgtttagggaaagagcaaagagcacgtgtc
tatgttgtttatggcggagccccaattgggaatcagattaatcgtttaaaacgaaatgcc
cctcaaattgtggttggaacaccaggacgtattttagacttgatgcgtcgtaaagcttta
aaattagatgagttacaaacattagtattggatgaagctgatgaaatgttgaatatgggg
tttattgacgacattcgtgccattattgagacgacccctgaaacacgccaaacattacta
ttttcagctactatgccaaaagaaattcgtaatttagccgatcaatttttaaaagaacca
gcacatattaaaattgaaactaaacaaattactgctgacttaattgaacagttttttatt
aaatgtcgtgacgatgaaaagtttgatgtgctaacgcgtttattagatgtacagtcaccc
aaacaagcaattgtcttctgtcgtactaaaaagcgtgtggatgaagtaggacgaggatta
tccttaagaggatttaatgcggaattaattcatggtgatattacgcaacaaaaacgtacc
actgttataaatcagttccgtaacggagaaattgaactattagtagccacggatgtagcg
gcacgtggtttagatatttctggagtaacgcatgtctataactatgatatcacccaagat
cctgaaagttatgttcatcgtatcggacgtaccggtcgtgcagggaatgaaggtgcttca
attacctttgtcacgcaaaatgagatgccatatttaagaacgattgaaacattaactcga
aaagcaatgacaccaatgaaaccaccaacagtccaagaggcacaatggggacaagttcaa
cagttaattgatcaagtcaatgaaattttagaagaaggtaatgcacaacaacatcgtaat
accgcaaaattattattagaacattaccaagcgaatgacttagtcactgctttattagga
acgattattaacgataatagtaatattgaagtacaaatctcaccacaaagaccattacca
aatgctcagcataaaaaaggttataaatcgggtaataaaggtcgtggtggcagaagagat
aatcgtcgtcgtgacggtggtagtcgtcgcgatggaggtaaatatggtggagaacgccgt
gagggtggacgcaatcgtgaccgtcgtcaagaccgtgaccaagattttaaacgtaaggat
aaaaagaaaaatccaaaatttgataaaaacacgcgtggtaaagaccaaggaaaaagcaac
aagtcttctaaaaaagtgaatatcaataaaaattttaaaatgatgaaaaaagattaa
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