Geotrypetes seraphini (Gaboon caecilian): 117345535
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Entry
117345535 CDS
T09159
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
117345535
NCBI-ProteinID:
XP_033770215
UniProt:
A0A6P8NM39
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Position
11:complement(86666530..86848993)
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AA seq
1231 aa
AA seq
DB search
MASSGFYLFTSLTMVICLLGPVCSQGTGRLKLMVLSEDRLQMKWKATEGNTDGYKVRVKP
LAGDTEQEVMLKTRTAKATVGGLNPTKEYTLQIYAISGSQEDLFANRKFVIENLKTSPST
TSIGTTVNTTKEAERSTTRNVTVLQATETGSSLPTHSLPAEAAKEKQEGTSQKAKSAKEA
GGKKTDLETIRPTAHSPSKERASPAAPKKRSRFQCDAVTQADVIILVDGSWSIGRNNFRL
IRDFLVGLLAPFHITSKHIRIGLSQYSGDPRTEWNLSTYHTKEEVLEAVRNLRYKGGNTF
TGLALTHVKEKIMRSEAGTRSGANKMLILLTDGKSQDDANPAAQSLKNAGIEIFAIGVKN
ADETELRLIASDPPELTVYNVLDFPLLISLLPRLTRALCSRIKERRKVEGPGKVLKLGYC
RHQYWREDDPAKASPVSRASHPSPTNLVVSEVTPWSMRLSWTSPAQEVEKFRIVYYPSQG
GTSREVVLGGMFSTVLLLNLTSQTEYLVSVFPIYASGMGEGLHGIASTMPLSLPHSLRVY
DVTHNTLRVGWQPADGATHYLVLCSPASDGLEQDAREVKVLDTELLLGGLSASTEYLVTV
YALFGEEASDPISIQEMTLKVPCPVDLKVTPISGDSVAVTWKAAATHVSVYQIKWIPLSG
GKPSELSVAGTQERAILMGLKTNTDYQISILARYQDGVQSDAVSIRHRTVPGSAEVPPRT
NDCPPLGTSEEDPRRGVDMMAAFGLVEKEYSSIDGVAVEPFIFSWARTYTLYEDIQLTRP
TREIHPDGIPTDYTISFLLRLLPHTSKEPFAVWQVVDEDLEPLVGLVLHSNKKFFTYFYH
DYKTDLQEVTFDQHEVKKIFYGSFHKVNIAVSYHTITLYIDCRKVSTKLMDRVNQVSIQG
FEMLGKLVATRGPRSGSAAFQLQSFQIICSSLWPEEDQCCDLPALRDEETCPALASSCSC
TSETRGPPGSSGPPGSPGARGPKGEQGEPGPQGEPGPPSQSGVEGPGSWTGSPSLRGITI
QGPEGTTDLKGDKGDVGSPGLQGAPGPQGSPGREGNPGPKGTRGLDGMSGLSGPQGFPGM
PGMRGRPGERGLVGDVGPTGLPGTKGERGEKGETQSATTIYQMVSEACEKLIQAHLLKLN
MFVDMHGKPLVPVMDEKLMPGEPRIPSQPGFSGTRGDTGQDGAPSEPSRNGYPGERGRPG
TKREKGSPGPSSQGPWGPKGQAGTSDFDFIP
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggcttctagtggcttttacctttttaccagtttaaccatggtgatctgtcttctggga
ccagtatgttctcaagggacagggcgtctgaagctgatggttttatccgaggacagactt
cagatgaagtggaaagcaacggaaggaaacacagatggctacaaagtgcgagtaaaaccc
ttggcaggtgacactgagcaggaggttatgctgaaaaccagaactgccaaagccactgtt
ggaggcctgaaccccacaaaggagtatacacttcagatctatgctatcagtgggtcgcag
gaagacctctttgcaaacaggaagtttgtgattgaaaatttaaagacaagccctagtact
acaagtatcggaaccacagtgaacaccacaaaagaagcagaacgctctactaccagaaat
gtcactgttctacaggccacagagactgggtcttcactccccacccactcattaccggca
gaagcagccaaggagaagcaagagggaacatctcagaaggcaaaatcagccaaggaagca
ggaggcaagaagactgacttggagacaataagacccacagcacactctcccagcaaagag
agagctagtccagcggcacccaagaagaggtctcgctttcagtgtgatgctgtgacgcag
gcagatgtgattattcttgtcgatggctcttggagcattgggcgtaataatttcagactt
attcgagatttccttgtggggttgcttgcaccatttcatatcacttccaagcacatcaga
attgggttgtctcagtacagtggggacccacgcacagagtggaatctcagcacttatcat
acgaaggaggaagtcttagaagcagtgagaaatctacgttataaaggggggaacacattc
acaggccttgcactaactcatgtgaaggaaaagatcatgcgatcagaagctgggacccga
tctggggcaaacaagatgcttattctcttgacagatggcaaatcccaggatgatgccaac
ccagctgctcaaagcctgaaaaatgcgggaatagagatttttgcgattggggtgaagaat
gcagatgaaacagagctccgattgattgcttcagacccccctgagttgactgtctataat
gtgctagatttcccccttctaatttcccttcttccccggctcacccgagcactctgcagc
agaatcaaagagaggaggaaggtggaaggtccagggaaggtcctgaaactgggatactgc
aggcatcagtactggagagaagatgatcctgcaaaagcctcacctgtaagcagagcctcc
catcccagcccaacaaaccttgttgtgtcagaggtgaccccttggagtatgcgtctcagc
tggacttcaccagctcaggaggttgagaagtttaggatagtatattatccctcacaaggt
ggcacatccagagaggtggtcttgggtgggatgttctccactgttctgctcctcaatctg
acctcacagacagagtacctggtctctgtatttcccatctatgcgagtggtatgggagaa
ggcctgcatggcatcgcctcaacaatgccactgtctcttcctcattccttgagagtatat
gatgtaacacacaacacgttacgtgttggctggcagccagctgatggagccactcattac
ttggtgctctgttctccagcttcagatggattggagcaggatgcaagggaggtgaaagtg
ctggacacagagctcttgctgggtggcttatctgccagtacggagtatttggtgacagta
tatgcactctttggagaggaagccagtgaccccatctccatccaagaaatgactttgaag
gttccttgccccgttgatttgaaggtgacaccaatctctggagacagtgtggcagtgaca
tggaaagctgcggctactcatgtgtctgtatatcagattaaatggattcctctcagtggt
gggaaaccaagtgagctttctgtggccggaactcaggagagagccattctgatgggtcta
aaaacaaacacagattatcagatatctattttggcacgttaccaggatggggttcagagt
gatgcggtgtccattcggcatcgtactgttcctggttcagctgaagtgccacccaggaca
aatgactgccctcctcttggcaccagtgaggaagatcccagaagaggagttgacatgatg
gcagcatttgggctggtagaaaaggaatattcctctatagatggagttgcagtggagcca
tttatcttcagctgggctcgtacatataccctttatgaagatattcaactaacacgacca
acaagagaaatccatccagatgggattcctactgattatacaatcagctttctcctccga
cttcttcctcacacatccaaggagccctttgctgtctggcaggtagtggatgaggatctt
gagccactcgttggacttgtccttcattccaataagaaattcttcacctatttctatcat
gactacaagactgatttgcaagaagtcacctttgaccaacatgaagtgaagaagatattc
tatgggagttttcataaggtgaatatagctgtgagttatcacactatcactctgtatatc
gactgtcggaaagtatcaacaaagctcatggaccgggtaaaccaggtctccatccagggc
tttgaaatgctggggaagttggtagccaccagaggaccaaggagtggatcagctgcattc
cagctacagtccttccagattatctgcagttctctctggccagaggaagaccaatgctgt
gatctgcctgcattgagggatgaagagacctgccctgcccttgcctcctcctgcagctgt
acttcagaaacacgtggacctccagggtcctctggaccacctggaagtccaggggcacga
ggaccaaagggggagcaaggtgaaccaggaccccagggggagccaggtcctcccagccaa
tcaggagtagaaggtccagggagttggactgggtcaccaagtctgcgtggaatcactatc
cagggtcctgagggaacaacagatcttaagggtgataaaggagacgtgggaagcccaggc
ttgcagggtgcccctggcccacagggatccccaggaagagaaggcaatccaggccccaag
ggcactcggggtcttgatggtatgtctggtttatctggccctcagggcttcccagggatg
ccaggcatgagaggcaggcctggtgaaagagggctggttggggatgttggaccaacgggt
ttgcctggtactaaaggagagaggggagagaagggtgaaacccagtctgctaccacaata
taccagatggtcagtgaggcctgtgagaagttaattcaggctcatcttttgaaactgaac
atgtttgtggacatgcatggaaagccactagttcctgtgatggatgaaaagctgatgcca
ggagaacctagaatcccaagccagcctggtttctctggtacaaggggagatacaggacaa
gatggggcccctagtgagccaagcaggaatgggtatcctggagaaagaggaagaccagga
acaaagagggagaaaggcagccctggaccaagcagccaaggcccttggggacccaaagga
caagctggtacttcagactttgatttcatcccatga
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