Geotrypetes seraphini (Gaboon caecilian): 117345676
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Entry
117345676 CDS
T09159
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gsh01001
]
117345676 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gsh04054
]
117345676 (CIITA)
Enzymes [BR:
gsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117345676 (CIITA)
Protein kinases [BR:
gsh01001
]
Serine/threonine kinases: Other
TAF1 family
117345676 (CIITA)
Pattern recognition receptors [BR:
gsh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117345676 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
NPHP3_N
LRR_4
LRR_8
DUF7885
AAA
LRR_9
LRR_NXF1-5
nSTAND_NTPase5
AAA_16
AAA_22
NB-ARC
AAA_7
Roc
DUF87
ABC_tran
Motif
Other DBs
NCBI-GeneID:
117345676
NCBI-ProteinID:
XP_033770571
UniProt:
A0A6P8P551
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All DBs
Position
11:complement(36714730..36833711)
Genome browser
AA seq
1146 aa
AA seq
DB search
MKSVGFPENSSLGLCSGDTDPLLLLEEAELLPDLDNENLTFEPFHSLDLCYDSAEKPYED
AEYSGIDIVEYILEDKQNGLLEEMLDGIDSSNKECCAEQKIRKCKKRSFLTKLKTQPEAS
QPKRRKPGPKTVVKIKPYPKIEKSTKVGSGYQYFPTGTCSPRILPSAPGLLSAVPVQLSF
VSPSPVGKTFVTPVASANPIMTLSTRGISVVPTYTSIPQQIVKLSPGNSVSHLVICTTPP
VQGAAQLITPVFPVSIPKAAASRISAVMLSGDTTVSSTLASPDGRASPSPFAPSAADLPN
LPEPARVDHCGLSDLDMSGHQTQASLLNSEKAVEIPKSVDTYHTLLKEHFRDKCKFLTKK
DNITLDSLYTEVSLVESQIKPKTGKSAAKAVEKELCLYDSFERERMAIDKSDLFKMARGK
QRETKRIALLGQAGTGKSVLVKKVCQDWSSGKFSEFTFVFRFKCRKMNLPGRRYSLKDLL
FQLFLKPQENSEEVFKYILCNPEKVLLIFDGFDELQDADGFVHCSVGLSADQSRTIKELF
AGLLQKKLLRGCTILITAMPKDKFSHYLARVDKIVETIGFSPPQIEEYFEKHFKMSPHCT
HAVKLIKECQYLFSYCFNPFLCNLICCLCKNKFHADQKLPVTLTSLFLKDLQQTLVDTTA
NPTSDQVGNQQCIAKLARIALTFGQKHQQILRYNQFPSEEVKDFALKYGFMLPFCTHPEN
GCKELGGVFCNSVAQTFWGALHLTLSTDVKDKNFMKYISLEARKKRPQDSWQDMVRRFLS
GLLFLKIELYLNFSSKSNIKSIITRKQKIVSKYLRELETTELGPSKLLELCHCVYETQNR
HLIQHLASTLPAELVFLATRLTPPDVFVLQYILKSSTKKFSLDLRNSVIDLYGLKQLVNV
DNVVLFRAPLSDTVKLLESLQETGEHELLRRSIEKFTIDPFKAKTMKDITDLTALVHVQE
NMQKGVQDINEIPAIKALKKLEFTLGSIHGPEGFLKLAEILPAFSSLQHLDLDENNIGNR
GVDKLSDVFPKLTLLKMLNLAQNNITDEGAKKLMKGLPSLSSLQILCLYNNYICDEGAEG
IAEILPVMKSLKELALQYNRITDLGAQKITESLKRCTQITSVLMWNPAIPHGVLEHLQQK
DSRIKF
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcggtaggttttcctgaaaatagcagcctgggcttatgttccggcgatactgat
ccactgctgcttttggaagaagctgaactattgccagacctcgacaatgagaacttgacc
tttgaaccttttcacagtctggatttatgttatgattctgcagaaaagccatatgaagac
gcagaatattctggaatagacattgtagaatatatactggaggataaacaaaatggccta
ctggaagagatgctggatggaattgacagcagtaataaagaatgttgtgcagaacaaaag
atcaggaagtgtaaaaaacgatcttttttaactaagctcaagactcagcctgaagcatca
cagccaaaacgaaggaaaccaggtcctaaaactgttgtaaaaataaaaccatatcccaaa
attgaaaagtcaacaaaagtaggaagtggttaccagtatttccccactggaacctgttct
cctagaattctgccatctgccccaggccttctgtctgctgtacctgtgcagttgtccttt
gtcagcccgagtccagttgggaaaacatttgtaacacctgtggctagtgctaaccccata
atgacactgagtaccaggggaatctccgttgttccaacttatacatcaattccccagcaa
attgtcaaattatccccaggaaacagtgtatcccatctcgttatatgtacaactccccct
gtacaaggagctgcacagttgataacacctgtttttcctgtcagcataccaaaagcggct
gcatctagaatttctgctgtcatgctatctggagacaccactgtgagtagcactctagca
tcaccggatggaagggcctctcccagtccatttgctccttcagctgccgacttgccgaat
ttaccagaacctgcccgtgtggatcattgtggcttatcagatttagacatgtctggccat
cagacgcaagcatccctgcttaattcggagaaagctgttgaaataccaaaatctgtagac
acttaccatactttactcaaggaacatttcagagacaaatgcaaatttttgacgaaaaag
gacaacatcactctcgacagtctttatactgaagtgagcctggtggaaagccaaattaaa
cccaaaactgggaaaagtgcagctaaagctgtagagaaagagctctgtctttatgattct
ttcgaaagagaaagaatggctattgataaatctgatctgtttaaaatggcaagaggaaag
cagagagagacaaaaaggattgctttgctgggacaggctggaacgggtaaaagtgttctt
gtaaagaaggtgtgccaagattggtccagtggaaaattttccgagttcacatttgtcttt
cggttcaaatgcagaaaaatgaacctccccggaagacgctatagtttaaaagacctgctt
ttccagctatttcttaagccacaagagaacagtgaggaagttttcaaatatatcctttgc
aatcctgaaaaggtgcttcttatttttgatggcttcgatgagcttcaggatgctgatggc
tttgtgcattgctctgttggcctttctgcagaccagtcacgcacaataaaggagctattt
gcaggacttctccagaagaagttgctccgtggttgcaccatactaataacagccatgcca
aaagataagttcagtcattacctggccagggtggacaaaattgttgaaacgattgggttt
tctccaccccaaattgaagagtactttgaaaaacattttaaaatgtcgcctcattgtaca
catgcagtgaaactgatcaaagaatgccaatatctgtttagttattgttttaacccattt
ctatgcaacctgatctgttgtctttgcaagaataagtttcatgcagaccaaaaactgcca
gtaactttaaccagcctatttttaaaggaccttcagcagacattggttgatactacagcg
aatcctaccagtgaccaagtaggaaatcagcaatgcattgccaagctagcccgcatagcc
ttgacctttggtcaaaagcatcaacagatcttgagatacaaccagtttccctctgaggaa
gttaaggactttgctttgaaatatggttttatgctgccattttgtactcatccagaaaac
ggttgtaaagaacttgggggggtgttttgtaactccgttgctcagacattttggggggca
ctgcatctaacattgtcaacagatgttaaggacaaaaacttcatgaaatacatttcctta
gaagccagaaagaaaagaccccaagatagctggcaagacatggtccgtagattcttaagt
gggctcctgttcctgaagattgagttgtacctaaattttagctcgaaaagcaatatcaag
agcatcataaccaggaagcaaaaaattgtgtcaaaatacttgagagaattggagacaact
gaactcggcccatccaagttgcttgagttgtgccattgtgtgtatgaaacacaaaacaga
cacctcatccaacatctggcttctacactccctgcagaacttgtatttctggctacacgg
ctcacaccacctgatgtctttgtgctgcaatacattttaaaaagttctacaaagaaattt
tctttagatttaagaaatagtgtcattgacctctatggattaaaacagttggtaaatgtt
gacaacgttgtattattcagagctcctctcagtgacacagtcaaacttttggagtcgttg
caagaaacaggggagcatgagcttctgaggcggtccattgaaaaattcactattgatcca
ttcaaggccaaaactatgaaggatatcactgaccttactgctcttgttcatgttcaggaa
aatatgcaaaagggtgtgcaagacatcaatgaaatcccagctataaaagccctgaaaaag
ttggaatttacacttggttcaattcatggccctgagggattcctgaaactagctgaaatt
cttccagcattttcatctcttcaacatttagacctagatgagaacaacattggaaacaga
ggagtggacaagctgtctgatgtgtttccaaaactaacattgctgaaaatgctgaaccta
gcgcagaacaatataactgacgaaggtgcaaagaagttgatgaaaggacttccttccttg
tcttccttacagatcttgtgtttatataataattatatatgtgatgaaggagcagaaggc
attgcagaaatacttcctgtcatgaaatcattaaaggaattggcgctgcagtacaacaga
ataactgacttaggagcccaaaagatcaccgagagcttaaagagatgtacgcagattaca
agtgtattgatgtggaatcctgcaatcccccatggggttctagagcaccttcaacaaaaa
gattctagaatcaagttctag
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