Geotrypetes seraphini (Gaboon caecilian): 117345740
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Entry
117345740 CDS
T09159
Symbol
TAF4
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117345740 (TAF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117345740 (TAF4)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117345740 (TAF4)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117345740 (TAF4)
Coactivators
SAGA/TFTC/STAGA complex
117345740 (TAF4)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117345740 (TAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
117345740
NCBI-ProteinID:
XP_033770718
UniProt:
A0A6P8P6Q7
LinkDB
All DBs
Position
11:93911643..94112616
Genome browser
AA seq
1051 aa
AA seq
DB search
MAAGSDLLDEVFFNTDVDEKVVSDLVGSLESQLAASGHNAPELGRAQGVANHVAGPGLGG
SASVQTESKMGLAQEMTKAAGAGVQAGVINNNGGGSGGRSQASTLDGTASAGTETPGTLG
QGKSVVISTMATTTLPNHGSGNGKSGPTALQTLNGSNVLMNSHHAGSATATFPGAHVAAS
AVTLVNNGPGSVAKGNGNPALPSGASTVIQTSFLSTPNVSSTVISSSSSSSSSSSSSSSQ
PAVGGPGPTTTTTPTTTTTTSTCAMVRPHLHLGPGIATQNGSNTVINSTLSVPSLPSCVG
SGVALQTSHLNSQPGVGLSTASSTQVIKSECPKTIIQVPPQSGQPNPGNMVIGQTMQAGL
SGVGPNLSGIPPPGTPTGIGKSTANTVVSSLPRTPNVTTGGLRATITPPVLAPRLPQPPQ
NPPNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAQSQTSMAPRPATPTSASPVHI
STVQASGAPIIARQVAPTIIKQVSQAQTTVQRPPVVQSQIVLGSTAQTTALGTASVVQTG
TQQRPVQGATTHSTAATETMENVKKCKNFLSTLIKLASSGKQSSETAANVKELVQNLLDG
KIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQQQQPSTQATTA
LTAVMLSGSIQRTAGKPTATVTSTLQQPVISLTQPPQVGKPGQPTPLVIQQAQKASTMVR
PPQVTLTQTPMVALRQPHNRIMLTAPPQIQLNQLQTVPVVKSAVLPGAKTLSTVSSQVAA
VQKNKLKEPGGGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDETFLL
PALLQRRILEIGKKHGIMEIHPDVISYVSHATQQRLQNLVEKVSETAQQKNISYKDDERY
EQATDVRTQLKFFEQLDQIEKQRKDEQEREILMRAARSRSRQEDPEQLRLKQKAKEMQQQ
ELAQMRQRDANLTALAAIGPRRKRKVDSPGPGSGLETSGTSTTVPGSSGTGTSRQFTRQR
ITRVNLRDLIFCLENERETSHSLLLYKAFLK
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggttcggacctgctagatgaggttttcttcaacacagacgtggacgagaaa
gtggtgagcgacctggtcggctccctggagtcccagctggcggcctcaggccacaacgcg
ccggagctcggtagggcccagggcgtcgccaaccacgtcgctggcccgggactgggaggt
agcgcgagcgtccagactgagagcaaaatgggacttgcacaggagatgacaaaagcagca
ggggctggagtgcaagcgggagtgattaataacaacggtggcggtagcggcggcaggtcc
caggcttcaaccctggatggcacagcgtcggccggcaccgaaacgcccgggaccctcggc
cagggcaagtcggtggtgatcagcaccatggcaacgactaccttgcccaaccacggctcg
ggcaacggcaagagcggccccaccgccctgcaaactttgaatgggagtaatgtgctgatg
aactcgcaccatgcaggaagtgctactgccactttcccaggcgctcacgtcgctgcgtcc
gctgtcaccctggtcaacaacgggcccggctctgtagccaaaggcaatgggaatcctgct
ctgccctctggggccagtactgtcatccagacttctttcctgagcacaccgaatgtttcc
tctacagtcatctcgtcctcttcctcctcctcctcttcttcttcctcctcctcctcgcaa
cctgcggtgggtggacctggacccaccaccaccaccacccctacgactacaaccaccacc
agcacctgtgccatggtcaggccgcaccttcatctcggacctggcattgctacccagaac
ggcagcaatactgtgattaattccactctcagtgtgcccagtttgccctcctgtgtaggc
tcaggggttgcactgcagacctcacatttgaacagccagcctggagtgggcttgtctaca
gcctcctctacgcaagtgatcaaatccgagtgtccgaaaaccattatacaagtgcccccg
cagtcagggcagcccaacccagggaacatggtgattgggcaaactatgcaagctgggctg
tccggtgttggcccaaatctgagtggcattccccctcctgggactccaactggaatagga
aaaagcactgctaatacagtggtttcaagtttgccgagaactccgaacgtgaccacaggt
ggtctccgagccactattactcctccggttttagcacctcgtctgcctcagcctccccag
aacccacctaatattcagaattttcagttgccaccgggtatggtgctggtgcgcagtgag
aatggccagctgttaatgatccctcagcaggctttagctcagatgcaggcacaggcacaa
tctcaaaccagcatggctccacggcccgccacaccgaccagcgcttctcctgtacacatc
tcaacggtgcaggcttctggtgcacctataattgcacgacaggtggcaccaacgataatt
aagcaggtgtctcaggcacagacgacagtacagcggccccctgtagtacagtcacagatt
gttctgggtagtacagcacaaacaacagcactgggaacagcatcggtggtacaaactgga
acccaacaaagacctgtgcaaggagcaacaacgcactccactgctgccacagaaaccatg
gaaaatgtgaagaagtgcaagaattttctatcaacgctaatcaaactggcttcctctggt
aaacagtcctcagaaactgcagctaatgtgaaagaacttgtccagaacttgctggatgga
aaaattgaagcagaagattttaccagcaggttatatcgagagcttaattcttcacctcag
ccttaccttgtgcctttcctgaagaggagtttacctgccctaagacaattaactccagac
tcagcagcttttattcagcagagccagcaacagcagccgtccacgcaagctacgaccgca
cttacagcggtgatgcttagtggctctatccagcgcactgcaggaaaacccactgccact
gtaacaagtactctgcagcagcctgtaataagtctcacacagcctccacaagttgggaag
ccagggcagcctacgccgctggttatccaacaggctcaaaaagcaagtactatggttaga
ccaccacaggtcacactgacgcagactcctatggtggcactgagacaacctcataatcgg
attatgctcactgctcctccacaaattcaattaaatcaactccaaacagtcccagtggta
aaatcagctgtattacctggagccaaaacgctttctactgtttcatcacaagtagccgct
gtgcagaagaataaactgaaagaacctgggggaggttcttttagggacgatgacgatatt
aatgatgtggcatcaatggcaggtgtcaacctatcagaagaaagtgcacggatattagca
acaaactctgagttagttggcacattaacaaggtcgtgtaaagatgagaccttcctgctg
ccagccttgttgcagcgaagaatactagaaataggtaaaaagcacgggattatggaaatt
catccagacgtcatcagttatgtgtcacatgcaacacaacaacgattacaaaacctagta
gaaaaagtgtcagaaactgcccagcagaagaacatttcttacaaggatgacgaaagatac
gaacaagcaactgatgttcgaacgcagctaaagttctttgaacaacttgaccaaatagaa
aaacaaaggaaagatgaacaagaacgggaaattttaatgcgagcagcaaggtctcgatct
agacaagaagatccagagcagctgaggttgaaacagaaggccaaggagatgcagcaacag
gaattagcacaaatgaggcagcgggatgccaacttaactgcattagctgcaataggacct
cgaaggaaacggaaagtggactctccgggacctggatcaggattagagacgtctggtaca
agcacgacagtcccaggcagctctggaacaggaaccagcagacagttcacgcggcaaagg
ataacgcgggtcaacctcagggacctcatattttgtttagaaaatgaacgagagacaagc
cattcattattgctatacaaagcattcctcaaataa
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