Geotrypetes seraphini (Gaboon caecilian): 117345806
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Entry
117345806 CDS
T09159
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117345806 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117345806 (PRPF4)
Spliceosome [BR:
gsh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117345806 (PRPF4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
PRP4
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
117345806
NCBI-ProteinID:
XP_033770864
UniProt:
A0A6P8NJY0
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Position
11:complement(131955420..131957712)
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AA seq
508 aa
AA seq
DB search
MSDDESGSPALKKSRIFYGSLAEKERERLARGEPALLGRAALRAAVEAGNINVAGGESFE
LEERVSERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGEPITLFGEGPAERRERLR
NVLSVVGADALKKSRKEEEKSPKAREEYQQTWYHEGPNSLKAARLCIARYSLPRALRRLA
GAREQKEVPEATRTSQKQELHKSLRSLNNVCSQIGDDRPLSFCHFSPNSRLLATACWSGL
CKLWSVPDCSLVKSLRGHNTNVGAIVFHPKSTLSLDEKDVNLASCAADGSVKLWNLDSDE
PVADIEGHMMRVARVMWHPSGRFLGTTCFDHSWRLWDLEAQEEILHQEGHSKGVYDIAFH
VDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGISFSPNGYHIATGSGDNTTKVW
DLRMRKCIYTIPAHQNLVAAVRFQPTNGNFLLTGAYDNTANVWTHPGWAPLKTLAGHEGK
VMGLDISLDGELIATCSYDRTFKLWMAE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgaaagcggttccccggcgctgaagaagtcgcgcatcttctatggcagc
ctggcggagaaggagcgcgagcggctggcccggggcgagccggcgctgctgggccgcgcg
gcgctgcgggcggccgtcgaggcgggcaacatcaacgtggcgggcggcgagtcgttcgag
ctggaggagcgcgtgagcgagcggcaggcggaggtgctggccgagttcgagcggcggaag
cgcgcgcgccagatcaacgtctccacggacgacgccgaggtgaaggcctgcctgcgcgcg
ctgggcgagcccatcacgctgttcggggaggggccggcggagcggcgcgagaggctgcgc
aacgtgctgtcggtggtgggcgccgacgcgctgaagaagagccggaaggaggaggagaag
agccccaaggcgagggaggagtatcagcagacctggtaccacgaggggcccaacagcctg
aaagcggcccggctgtgcatcgcgcgctattcgctgccgcgcgcgctccgccggctggcg
ggcgcgcgcgagcagaaggaggtccccgaggccacgcgcacctcgcagaagcaagagctg
cacaagtccctgcgctccctcaacaacgtctgcagccagatcggcgacgaccggcccctc
tccttctgccacttcagccccaactccaggctcctggccacggcgtgctggagcggcctg
tgcaagctctggtcggtgcccgactgcagcctggtgaagtcgctgagggggcacaacacc
aacgtgggggccatcgtgttccatcccaagtccaccctctcgctggacgagaaggacgtc
aacctggcgtcctgcgcagccgacggctcggtcaagctctggaatctggacagcgacgag
ccggtggccgacattgagggccatatgatgagagtggcccgagtgatgtggcacccttcc
ggcagattcctgggaaccacctgctttgaccattcgtggcgcctctgggatctggaagcc
caagaagagattctgcatcaggaggggcacagtaaaggggtctacgacattgcctttcat
gttgacggctcgctggccggcacaggtgggctcgacgcatttggcagggtttgggacttg
aggactggccgctgcatcatgttccttgagggacacctgaaggagatctatggcattagc
ttttctcctaatgggtatcacattgcgacaggaagtggcgacaacacaactaaagtgtgg
gatctgcgtatgaggaagtgcatttataccatccctgcccaccaaaatctggtggcagct
gtcagatttcaacctaccaatggtaacttcttgctaactggtgcctatgataacactgca
aatgtctggactcatcctggctgggccccactgaaaacactggctggccatgaaggcaaa
gtcatgggactagatatttcactggatggagaactgatagccacgtgctcatacgacagg
accttcaaactttggatggcggaataa
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