Geotrypetes seraphini (Gaboon caecilian): 117345874
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Entry
117345874 CDS
T09159
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117345874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117345874
03009 Ribosome biogenesis [BR:
gsh03009
]
117345874
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117345874
Spliceosome [BR:
gsh03041
]
Complex A
U1 snRNP components
U1 related factors
117345874
Complex B
117345874
Ribosome biogenesis [BR:
gsh03009
]
Eukaryotic type
Pre-60S particles
Helicases
117345874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
Helicase_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
117345874
NCBI-ProteinID:
XP_033771034
UniProt:
A0A6P8NKE3
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All DBs
Position
11:116013018..116017005
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AA seq
613 aa
AA seq
DB search
MPGYGNDRDRGRDRGFGGPRFGGSRGGPPPGKKFGNPGERLVKKTWNLHELPKFENNFYQ
EHPNVTRLTPQEVEQYRRGKEITVRGHNCPKPVINFFEANFPANLMDVIKSQNFTEPTAI
QAQRWPVVLSGLDMVGIAQTGSGKILSYLLPGIVHINHQPFLERGDGPIVLVLAPTRELA
QQVQQVAADYGRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVHI
NIGALELSANHNILQIVDVCQDGEKDDKLLRLMEEIMSEKENKTIVFVETKRRCDDLTRR
MRRDGWPAMGIHGDKSQQERDWVLSEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHQIGRTARSSKTGAAYTFFTPNNVKQVSDLISSTSRLREANQAINPKLLQLIED
RGRFRGRGMKDDRRDRYSTGKRFGGGLRDRENYNRGYGSKPQNSAYNTPNYSNGNAYGNY
STAGMQSIYRSGNQTASYQNGYDANQQYGTMMNGMAQQQYSYPATTANTAPPPPPAATTT
PMMGYPMPTGYPQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatatggaaacgacagagaccgtggtagagatcgagggtttggcgggcctcgc
tttggagggagtagaggaggacccccacctggaaagaagtttggaaaccctggtgagaga
cttgtgaagaaaacttggaacttgcatgagctccccaaattcgagaataatttttaccag
gagcatcctaatgtaactagactcacaccgcaagaagttgagcagtacagaagaggcaag
gagatcacagttaggggtcataactgccctaaacccgttataaatttctttgaagcaaat
tttccagctaaccttatggatgtaataaagtctcagaatttcactgagccaacagctatt
caggcacaaagatggccagttgtgttaagtggactggatatggttggcatagcacaaaca
ggatcgggaaaaattctttcttatttgttgcctggtatagtccatataaaccatcaacca
tttctggaacgaggggatggaccaattgtattggtactagcgccgactcgagaattagct
caacaggttcagcaagtggcagctgactatggtagggcatgccgtctgaaatcaacctgc
atctatggaggtgctccaaagggaccacagattcgtgatctagaaagaggtgttgaaatc
tgcattgcaactcctggacgactgatagactttttagaagctggaaagaccaatcttaga
aggtgtacttaccttgtgctcgatgaagctgatagaatgcttgatatgggttttgaacct
caaataagaaaaattgtggaccaaatcagacctgacagacagacattgatgtggagtgca
acatggcccaaagaagtgagacagcttgctgaagactttttaaaggattatgttcacatc
aacattggcgcattagagctgagtgcaaaccacaatattcttcagattgtggatgtatgc
caggatggtgagaaggatgataagctgcttcgattaatggaagaaattatgagtgaaaaa
gaaaacaaaaccattgtctttgtagaaaccaaacggcgatgtgacgatctcacacgacgg
atgagaagagatgggtggccagccatgggcattcatggagacaagagtcagcaggagcgt
gactgggttctgagtgaattcaaacatggtaaagcgcctatcctgattgctacagatgtt
gcatcaagagggttagatgtggaagatgtgaaatttgtcatcaattatgactaccccaat
tcctcagaggactatatccatcaaattggaagaactgcccgtagtagcaaaacaggggca
gcttatactttctttactcctaacaatgtaaaacaagtaagcgacctcatctcttcgact
tcgcgacttcgggaagctaaccaggcaatcaacccaaaactgctacagctaattgaagac
agaggtcgattcaggggtagaggcatgaaggatgaccgtcgtgacagatactctacaggc
aagaggtttggtggtggtcttagagacagggaaaattataaccgaggctatggttcaaaa
cctcagaatagtgcttacaatactcccaactatagtaacggcaatgcctatggaaactac
agtacagcaggcatgcagtctatctacagatctggaaatcaaacggcatcctatcagaat
ggttatgatgcaaaccaacaatatggaactatgatgaatggtatggcccaacagcagtac
tcatatcctgcaacaactgccaatactgctcctcctcctcctcctgctgctaccactact
ccaatgatgggctatccaatgccaacaggatatcctcagtaa
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