Geotrypetes seraphini (Gaboon caecilian): 117346456
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Entry
117346456 CDS
T09159
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117346456 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117346456 (XAB2)
03041 Spliceosome [BR:
gsh03041
]
117346456 (XAB2)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117346456 (XAB2)
Spliceosome [BR:
gsh03041
]
Complex B
Other components
Prp19-related factors
117346456 (XAB2)
Complex C
117346456 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_19
TPR_8
TPR_12
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
RPN7
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
117346456
NCBI-ProteinID:
XP_033771913
UniProt:
A0A6P8PAH7
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All DBs
Position
12:complement(111702498..111808511)
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AA seq
834 aa
AA seq
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MNWKEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPHSVLNLIYERALKELPGSYKLWYN
YLKQRRKQVKVRCITDPGYEEVNNCHERALVFMHKMPRIWLDYCRFLMDQCKITRSRRTF
DRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPESAEEYIDYLRSIDRL
DEAALRLATIVNDEDFVSKEGKSNYQLWHELCNLISQNPDKVKSLNVGAIIRGGLTRFTD
QLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIAAKMET
TSELGKEEEDDVDLELRLARFEQLINRRPLLLNSVLLRQNPHNVHEWHKRVKLYEGKPRE
IINTYTEAVQTVDPLKATGKPHGLWVAFAKFYEENGQIEDARTIFAKATKVNYKQVDDLA
SLWCEYGEMELRHENYDQALRILRKATAMPGKKAEYFDNSEPVQNRLYKSLKVWSMLADL
EESLGTFKATKAVYDRILDLRIATPQIIINYALFLEEHKYFEESFKVYERGISLFRWPNV
YDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPCKFAKTIYLLYAKLEEEFGLARHAM
AVYERATRAVESAEQYEMYNIYIKRAAEIYGVTYTRSIYEKAIEVLTDEHSREMCLRFAD
MESKLGEIDRARAIYSYCSQMCDPRLTATFWQTWKDFEIRHGNEDTIREMLRLKRSVQAT
YNTQVNFMASQMLKISSTTDLASGQREMDDMKLLEQRAEQLAVEAEKDKPRVKEKILFVR
SDASRSELAELTKEANPDEIDIDDDDESNEDEPDEVNLQQRSVPSAVFGSLKDD
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaaggaagaagaggatttacaatatgaagaggaaatccttcgcaatccattt
tctgtgaaatgctggattcgttacattgagtttaaacagaatgctccccacagtgtgctg
aatctgatttatgagagagccctcaaggaactgccaggaagctataagttatggtataat
tatctgaagcagcgtcggaagcaagtgaaagtcaggtgcatcacagatccaggctatgag
gaagtgaacaactgccatgagagggcattggtgttcatgcataagatgccccggatctgg
ctggattactgtcggttccttatggatcaatgtaagatcacccgtagtcgtcggacattt
gaccgagccctccgagccctccccatcacacagcaccatcgcatttggccgctctaccta
aagtttgtacgtctctatcctttgccagagactgctgtgcgggtctacagaaggtacttg
aagctaagccctgagagtgccgaagagtatattgattacctccggtccattgatcgactg
gatgaagcagctttacgtcttgctaccatcgtcaatgacgaagattttgtgtccaaggag
ggcaagtccaactaccagctgtggcatgaattatgtaacctgatttcccagaatcccgac
aaagtgaaatccctgaatgtgggtgccattattcgtggaggcttgactcgcttcacagat
caactgggcaaactttggtgctccctggcagactactacattcgaagcggccattttgag
aaggctcgggatgtttatgaggaagcaatccagacagtgatgacagtccgggatttcact
caagtgtttgacagctatgcccagtttgaagaaagcatgatagcagccaaaatggagact
acatccgaattgggaaaagaagaggaggatgacgtggacctggaattgagattagcacgt
tttgagcagctcatcaatcgccggcctctgcttctgaacagtgtactgttgcggcagaac
ccccataacgtgcacgaatggcacaagagggtgaagctctacgagggaaagccacgagag
attataaacacctacacggaagcagttcagactgtggatcccctcaaagctactgggaaa
ccccatggactctgggtggcttttgccaagttttatgaagaaaatggacaaattgaggat
gcaaggacaatctttgcgaaggccaccaaggtgaattataaacaggtggatgacctggca
agtttgtggtgtgaatatggtgagatggagctgcggcatgagaattatgatcaggccctg
cgtatcctgcggaaagccacagccatgccaggaaagaaggcagagtactttgacaattca
gaaccagtccagaatcgcttgtacaaatccctcaaagtctggtccatgctggcagatctg
gaggaaagtctgggcaccttcaaagctacaaaagcagtgtatgatcggatcctggacctg
cgcattgcaacacctcaaattatcatcaactatgccttatttctggaagaacacaagtac
tttgaggagagcttcaaggtgtatgagagaggaatatctctatttagatggcccaacgta
tacgatatctggaatacctacttgaccaaattcattgaccgctacggagggaagaaactg
gagagagcccgggacctctttgagcaggcactggatggttgtccatgcaaatttgcaaaa
actatttacctactatatgctaaactggaggaggagtttggcttggcacgacatgctatg
gcagtgtatgaacgggcaacccgtgctgtggagtcagcagagcagtatgagatgtataac
atctatatcaaaagagcagcagagatctatggtgtcacctatacacgcagcatctatgag
aaagctatcgaggtactgactgatgagcattctcgtgagatgtgtcttcgttttgctgac
atggagtccaagttaggagagattgacagggcccgagccatttattcatactgctcacag
atgtgtgacccacggttgacagctaccttctggcagacatggaaagactttgagatccgt
catgggaatgaggatacaatccgtgaaatgctacgacttaaacgcagcgtacaggccacc
tacaacacccaggtcaacttcatggcatcacagatgctgaagatctctagcaccacagac
ctggcttctggacagagagagatggatgacatgaaactgctagagcagagggctgagcag
ctcgctgtagaagctgagaaggacaagcccagagtcaaggagaaaatcctctttgtccgg
agcgatgcttcacgtagcgagctggcagagctcaccaaagaggccaacccagatgaaatt
gacatagatgatgatgatgaaagcaacgaggatgaaccagatgaggtaaacctacagcag
agaagtgtgccctcggcagtatttggaagtctaaaggatgactga
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