Geotrypetes seraphini (Gaboon caecilian): 117346487
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Entry
117346487 CDS
T09159
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03013
Nucleocytoplasmic transport
gsh03015
mRNA surveillance pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117346487
09122 Translation
03013 Nucleocytoplasmic transport
117346487
03015 mRNA surveillance pathway
117346487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117346487
03041 Spliceosome [BR:
gsh03041
]
117346487
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117346487
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117346487
Spliceosome [BR:
gsh03041
]
Complex C
Other components
EJC/TREX
117346487
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117346487
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117346487
NCBI-ProteinID:
XP_033772031
UniProt:
A0A6P8N8V1
LinkDB
All DBs
Position
12:119439449..119463033
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAAGDATDASTKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTVKVSVFFGGLAIKKDEEVLKKSCPHIVVGTPGRILALA
RNKCLNMKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgacgtggacaacgaactgctcgactatgaagatgatgaggtggagaac
caggctgcaggtgatgcaaccgatgcctccaccaagaaggacgtgaaaggctcttacgtc
tccatccacagctctggcttccgggacttcctgttgaagcctgagctactccgagccatc
gtagattgtggctttgagcacccctctgaagtgcaacatgagtgcattccgcaggccatc
ctgggcatggatgtgctgtgtcaggccaagtcgggtatgggcaagacagcggtctttgtg
ctagccaccttgcagcagctggagccagttacgggacaggtatctgtccttgttatgtgt
cacacacgggagctggcgtttcagatcagcaaggagtatgagcgcttttccaagtacatg
cccactgttaaggtttctgtgttttttgggggtctcgccatcaagaaggatgaggaggtg
ctgaagaagagctgcccccacatcgtggtggggacccctggccgcatcctggcgctggca
aggaacaagtgcctgaacatgaaacacatcaaacacttcatcctggacgaatgtgacaaa
atgctggaacagctcgacatgcgacgtgacgtccaggagattttccgcatgaccccgcat
gagaagcaggtcatgatgttcagcgccaccctgagcaaggagatccggcctgtttgccgc
aaattcatgcaggatccgatggagatctttgtggatgatgagacgaagttgacactgcac
ggcttgcagcagtactacgtgaagctgaaggacaatgagaagaaccggaaactcttcgac
ctgctggacgtgctggagttcaaccaggtggtgatcttcgtgaagtctgtacagagatgt
attgcactggcgcagcttctggtggagcaaaacttccctgcaattgcgattcaccgtggt
atggcccaagaggagaggttatcccgctatcagcaattcaaagactttcagcgacgtatc
ttggtagccaccaacctttttggtcgtggtatggacatcgagagggtcaacattgccttt
aactatgacatgccagaagattcggacacctacctgcacagagtggcccgggcaggccgc
tttggcacaaagggcctggccatcactttcgtgtcagacgagaatgatgctaaaatactg
aatgacgtgcaagatcgcttcgaggtgaacatcagcgagcttccagacgagatcgatatc
tcctcatacattgaacagacccgataa
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