Geotrypetes seraphini (Gaboon caecilian): 117346684
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Entry
117346684 CDS
T09159
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117346684 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117346684 (COL11A1)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117346684 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
117346684
NCBI-ProteinID:
XP_033772536
UniProt:
A0A6P8PAI8
LinkDB
All DBs
Position
12:11669036..12197111
Genome browser
AA seq
1817 aa
AA seq
DB search
MEVRRWSTRWKTKRRRWDSVITAALVTFTFVLQAAEVRGAEPTDVLKALGFHSLPDGISK
TEGFCTNRKDSRGSDAAFHSSKHAQLSAPTKQLFPGGVFPKDFSILLTIKPTKGLQSFLL
SIYSELGILQLGVEVGRSPVFLYDDQNGKLSSEEYPVFKGTNIADGKWHRVAISVEKKTV
TMIVDCKKKTTKPLDRHDKGIIDTSGISVFGTRILDEEVFEGDIQQFLIVDDPRAAYDYC
EHYSPDCDSPGPDAAQAQDPEVENYTPEDLFDYDYVYGEEDYKDIPFATEEPTQTEDLIT
QTEANIVEDIHEYNVEETDYGFPENSQTESPVQTTRTNEQKPTEESFAEEYITGEEYDSE
AKKPDDTEYEKKEVDLSEPEVLVDGDLGPYDFYEYKEYEEKPTSPTMEEEFGPGVPAEID
VTETNVDTYGTYGEKGQKGEPAVIEPGMLFEGPPGPEGPRGHTGSPGSHGSPGPAGDPGE
RGLPGRAGIPGADGLPGPPGTMFMLPFRFAGGGGDKGPAVSAQEAQAQAILQQARLAMRG
PPGPMGLTGRSGPMGGPGAPGSKGESGDGGPQGPRGIQGPAGPNGKSGKRGRTGADGARG
MPGESGAKGDRGFDGLPGLPGDKGHRGERGTQGPPGSPGDDGGRGEDGEIGPRGLPGEPG
PRGLLGPRGPSGPSGQPGVAGIDGPPGPKGNVGPQGEPGPSGQQGIPGPQGLPGPQGLIG
PPGEKGPHGKPGLPGLSGSDGPPGHPGKEGQSGEKGALGPSGPQGPIGYPGPRGVKGADG
VRGHKGVKGEKGEDGFPGFKGDMGLKGDRGENGQLGPRGEDGPEGPKGRAGPMGDSGGAG
LAGEKGKLGVPGLPGYPGRQGQKGSIGFPGFAGSNGEKGARGGAGKSGPRGQRGPTGPRG
SRGIRGPTGKPGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPHGPPGKDGLPGHPG
QRGESGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKG
DPGLQGVGGKSGPPGLRGFPGERGLGGAQGPGGLKGGEGPQGPPGPAGSPGERGAAGTAG
PIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPQGPPGEDGDKG
EIGESGQKGGKGDKGESGPPGAPGLQGPIGAPGPAGSDGEHGPRGQQGMFGQKGDEGSRG
FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGSPGPVGTVG
HVGDKGEPGDAGNPGPPGEAGTSGPKGERGEKGEAGPHGAAGPPGGKGPSGEDGPKGNPG
PVGFPGDPGPPGEPGTAGQDGGSGDKGEDGEPGQQGPPGPSGEAGPPGPPGKRGPPGAVG
AGGRQGEKGAKGEPGAEGPEGKTGPVGPQGPTGKPGPEGLRGIPGPVGEQGLPGAAGQDG
PPGPMGPPGLPGLKGDHGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGPAGTKGDSG
ITGPSGPLGPPGPPGLPGPQGSKGSKGSSGFAGQKGDSGLPGLPGPPGPPGDVIQPLPIL
SSKKSRRSSDDMLADAGDDILEYTDGMEEIFGSLNSLKQDIEHMKYPMGTHNNPARTCKD
LQLCHPEFPDGEYWIDPNQGCTGDSFKVYCNFTAGGETCIFADKKSEGVRIASWPKENPG
TWFSEFKRGKLLSYVDVEENPINMVQMTFLKLLSSSARQNFTYNCHQSVAWHDASSDNYD
KALRFLGSNDEEMSYDNNPYIKALHDGCALKKGYGRTVLEINTLKIDQLPIVDVMFNDFG
DQNQKFGFEVGPACFLG
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgcggaggtggtccacaaggtggaagacgaaaaggcggcgctgggattccgtg
atcaccgctgctctcgtcacttttactttcgttctgcaggcggcagaggtcagaggagct
gaacccactgatgtactaaaagccttaggatttcacagcttacctgacggaatttcaaaa
actgaaggattttgcacaaacagaaaagattcacgaggatccgacgctgcctttcacagt
tcaaaacatgcgcaactcagtgctccaacaaaacagttattcccaggtggagtttttccc
aaagacttttcaattttgcttacaataaaacctaccaaaggcctccagtctttccttcta
tcaatttacagtgaacttggtattctgcagttgggcgtcgaggttggtagatctcctgtt
ttcctatatgatgaccaaaatggtaaactttcctctgaagaatatcctgttttcaaaggc
accaacatcgcagatggcaagtggcatcgagtagctatcagtgtggaaaagaaaactgtt
actatgattgtagactgcaaaaagaaaaccacaaaaccacttgacagacacgacaaagga
attattgacacaagtggtatctcagtctttggaacccgaattcttgacgaggaggttttt
gagggtgatatccagcagtttttgattgttgacgatcccagggcagcttatgattactgt
gaacattacagtcccgactgtgattctcctgggcccgatgctgctcaggctcaggacccc
gaagttgagaattacacaccagaagatttattcgactatgactatgtgtatggggaagag
gattataaagatattccatttgcaacagaggaacccacacaaactgaagatttaataacc
caaactgaggccaacattgtggaggatatccatgagtataatgtggaggaaactgactat
ggatttccagaaaattcccaaactgaatctcctgttcaaactactagaacaaatgagcaa
aagccaactgaagaatcatttgctgaagagtacataacaggcgaggaatatgattctgag
gccaaaaaacccgacgatacagaatacgagaaaaaagaagtagatctcagtgaacctgaa
gttctggtagatggagatttaggaccttatgacttttatgaatacaaagaatatgaagaa
aaaccaactagtcccacaatggaggaggaatttggtcctggggtaccagctgagatcgat
gtcacagaaaccaatgtagatacctatggtacatatggggaaaagggccaaaaaggagaa
cctgctgtgattgagcctgggatgctttttgaagggccacctggaccagaaggaccacga
ggacatacgggctctccaggttcacatggatcccctggccctgctggtgatcctggtgag
aggggtctcccagggcgtgctggtattccaggagccgatgggctgccaggtccaccaggg
actatgtttatgttaccatttagatttgctggtggcggtggtgataagggtccagctgtt
tcagcccaggaagctcaagcccaggctatccttcagcaggccaggcttgctatgagaggt
ccacctggtccaatgggtcttactggaagatcaggtccaatgggcggacctggagctcct
ggttctaaaggtgaaagtggagacgggggaccacagggtcctcgaggaattcaaggtcct
gctggtccaaatggaaaatctggaaaaaggggtcgtactggtgctgacggagctagggga
atgccaggagaatctggggcaaaaggtgatagaggttttgatggtcttcctggtcttcct
ggtgataaaggccacaggggagaacgaggtactcaaggtccccctggttccccgggcgat
gatggaggaagaggagaagatggagagattggaccaagaggtcttccaggtgaaccgggt
ccaagaggattattggggccaagaggaccgtctggaccttcaggacaacctggtgttgct
ggtattgatgggccaccaggtcccaaaggaaatgtgggtcctcagggtgaacctgggccc
tctggccagcaaggaattccaggcccacaaggtcttcctggtcctcaaggtcttattggc
cctcctggtgaaaaagggccacacggcaagcctggtcttcctggactttctggttctgat
ggacctcctggtcatcctggcaaagagggccaatctggagagaaaggcgcattggggcct
tcaggtccgcagggtcccattggctatcccggtcctcgtggtgtgaagggtgctgatggt
gtccgtggtcataaaggtgtcaaaggtgaaaagggtgaagatggattcccaggctttaaa
ggtgatatgggacttaaaggtgatagaggtgaaaatgggcagttaggtccaagaggtgaa
gatggtccagaaggtccaaaaggtcgagcaggtccaatgggtgactcaggaggtgctggc
ctggcaggtgaaaagggtaaactcggtgtcccgggcctcccaggatatccaggaagacaa
ggacaaaagggttcgatcggtttccctggatttgcaggctctaatggagagaaaggagca
cggggtggggctggaaaatcaggaccaagggggcaacgaggaccaacgggtccacgtggc
tctagaggaataagaggtcccacaggaaagccaggtccaaagggtacttcaggcaatgat
ggccctcctggtccacctggtgagcgtggtcctcaaggacctcagggacctgttggattc
ccaggaccaaaaggaccccatggaccacctggaaaggacggattacctggtcatccaggt
cagcgaggagaaagcggctttcaaggcaaaactggtcctccaggtccaggaggggtcgta
ggtccacaggggcctactggtgagactggtccaattggtgaaaggggtcatcctggtcct
cctggcccacctggtgaacaaggccttccaggtgcagcaggcaaagaaggagcaaaggga
gatcctggtcttcaaggagttggtggaaaaagtggaccaccaggacttcgtggatttcct
ggagagagaggtcttggaggagctcagggtcccggaggtcttaaaggaggagaaggccca
caaggtccacctggcccagctgggtcacctggtgaacgaggagctgctggtactgcgggt
ccaattggtttacctggacgaccaggtcctcaaggtcctcctggtccagcaggagagaaa
ggtgcccctggtgaaaaaggacctcaaggtccagctggacgtgatggtatacaaggtccc
gtgggtcttcctggccctgctggaccacagggccctccaggtgaagatggagataagggt
gaaattggtgaatctggacagaaaggagggaaaggtgataaaggagaaagtgggcctcct
ggtgcacctggtcttcaaggtcccattggagcacctggtccagcaggaagcgatggggaa
catggtccaagaggtcagcagggaatgtttggacagaaaggtgatgaaggatcacgtggt
tttcctggtccacccggtcccatcggtcttcagggtctacctggcccacccggtgagaag
ggagaaaatggtgatgttggtccaatgggtccacctggtcctccaggaccaagaggtcct
caaggtcctaatggagccgatggcccacaaggttctccaggtccagttggcacagttggt
catgtgggtgacaagggtgaaccaggagatgctggcaacccaggacctcccggagaagct
ggcacatctgggcccaaaggtgaaaggggagaaaaaggtgaagcaggtccgcatggtgct
gctggacctccaggtggtaagggaccatcaggagaagatggcccaaaaggaaacccaggt
cctgttggtttccctggagatcctggtcctcctggtgagcctggaactgctggtcaagat
ggtggctcaggtgacaaaggtgaggatggtgaacctggacaacaaggtcctcctggtcct
tctggagaagctggtccacctggtcccccaggcaagaggggccctccaggagctgtaggt
gctgggggaagacaaggtgaaaaaggagcaaagggtgaacctggtgcagaaggtcctgaa
gggaaaacaggcccagttggtcctcagggtccaacaggaaaacctggtccagaaggcctc
cgtggtattcctggtcctgtgggagaacaaggtcttcctggagctgcaggccaggatggt
ccacctggtcctatgggtccacctgggttacctggactgaaaggagatcacggtagtaaa
ggtgaaaaaggacatccaggtttaattggtttaattggtcctcctggagagcaaggtgaa
aaaggtgacaggggtcttcctggcccacagggtcccgctggcaccaagggtgattctggt
attactggcccctctggacctcttgggccacctggccctcctggtttacctggtcctcaa
ggatctaaaggctcaaaaggttcatcaggttttgctggtcagaaaggtgattctggttta
cctggattacctggtcctcctggtccccctggagatgtcatacagcctctgccaatcctt
tcatctaaaaagtcaagaaggtcctctgatgatatgctggctgatgcaggtgatgacatc
ctggaatatactgatggtatggaagagatctttggatcgctaaactctctgaagcaggac
attgagcacatgaagtacccaatgggcacacacaataacccagcccgaacttgcaaagat
ctacagttgtgccatccagaattccctgacggggaatattggattgatcctaatcaggga
tgcactggagattcctttaaagtttattgcaacttcacggcagggggcgagacatgtatc
tttgcagacaagaagtcagaaggcgtcagaattgcatcatggccaaaagaaaatccagga
acatggttcagtgaatttaaaagaggtaaactgctctcatatgtggatgttgaagaaaat
ccaattaatatggttcaaatgacattccttaaactactgagctcctctgccaggcaaaat
ttcacttataactgtcaccagtcagtagcttggcacgatgcatcatctgacaactatgac
aaagcgctgagattcctaggatcaaacgatgaagaaatgtcttatgacaacaacccttac
atcaaagcccttcatgatggttgtgcattgaagaaggggtatggaaggactgtgcttgaa
atcaacacactaaaaatagaccagctgcctattgtagatgtgatgtttaatgactttgga
gaccagaaccagaaatttggtttcgaagttggccctgcctgtttcctgggctaa
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