Geotrypetes seraphini (Gaboon caecilian): 117346849
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Entry
117346849 CDS
T09159
Symbol
NCBP1
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03013
Nucleocytoplasmic transport
gsh03015
mRNA surveillance pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117346849 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
117346849 (NCBP1)
03015 mRNA surveillance pathway
117346849 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117346849 (NCBP1)
03041 Spliceosome [BR:
gsh03041
]
117346849 (NCBP1)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
117346849 (NCBP1)
Spliceosome [BR:
gsh03041
]
Common components
Common spliceosomal components
Cap binding complex
117346849 (NCBP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
CCDC39
DUF1690
DASH_Spc19
Vfa1
KASH_CCD
C24B10_03
Motif
Other DBs
NCBI-GeneID:
117346849
NCBI-ProteinID:
XP_033772904
UniProt:
A0A6P8NQA1
LinkDB
All DBs
Position
1:complement(388635935..389033489)
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AA seq
792 aa
AA seq
DB search
MSRRRHSDENDGGQPHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKSKILRILCTVARILPEKLTVYTTLVGLLNARNYNFGGEFVEAMVRQLKESLKCNQ
YTEAVYSIHFLSDLVNCHVIAAPSMVAMFENFVNVTQEEDVPQVRCDWYVFAVLSSLPWV
GKELYEKKDVEMDRILSQIENFLKRRQKIHVPMLQVWIADKPHPQEEYLDCLWAQIQKMK
KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSMYPMPRVIFRLFDYTDAPEG
PVMPGSHSVERFVIEENLHYIINSYWKERKSCAAQLLSYPGKNKIPLNYHIVEVIFAELF
QLPVPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMFYMRMDSMNTTCIDRLINWFSHH
LSNFQFRWSWEDWSDCLTQDLDKPKPKFVKEVLEKCMRLSYHQRILDIVPAAFSALTPPT
PACIYKYGDESNSSLPGYPVAISLTNAIKSKGTNEEIFSILKDVPNPNQDDDDDERFSFN
PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEIFKTLAESDEGKLHILRVMYDVWKNHPQM
IAVLIDKMIRTQIVDCAAVANWIFSPELSHDFTRLYIWEILHSTIRKMNKHVQKIQRELE
ETKGKLEKQHKRRDSDDDDDRSSDREDGPLEEQIERLQEKVESAQSEQKNLFLVIFQRFI
MILTEHLVRCETGGIDVITPWYKNCIERLQQIFLQHHQIIHQYMVTLENLLFTAELDHHI
LTVFQQFCALQT
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggaggaggcatagtgatgagaatgatggaggacaacctcacaaaaggaggaga
acttcagaacccattgaaattgaagacagactagaatctctaatatgcagagtgggagaa
aagagtacatcttcgttggagagcaacttggaaggacttgctggcgttttggaggctgat
ctaccaaattataagagcaagatcttaagaattctttgtacagttgctcgtattctgcct
gagaaactgactgtttacacaacattggttggattactgaatgctaggaattacaacttt
ggtggagagtttgtagaagctatggttcgtcaactcaaagagtctttgaaatgcaaccag
tatacagaagctgtttattccattcattttctgtctgaccttgtgaattgccatgtgata
gctgcaccttctatggtagccatgtttgaaaattttgtaaatgtgactcaagaggaagat
gttccacaggtccgttgtgactggtatgtgtttgctgttctttcctctctgccatgggta
ggaaaggagctgtatgaaaagaaagatgttgaaatggatcgcattttatcacaaattgaa
aactttctgaagagacgccagaagattcatgtacctatgttgcaagtttggattgctgat
aaaccacatcctcaagaagagtatttagactgcctttgggctcagattcagaagatgaaa
aaggatcgctggcaggaaagacacatcttgcgtccatatcttgcatttgacagcatcctt
tgtgaagcattgcaacacaatctgcctccttttactccacctccgcatactgaggactcc
atgtaccccatgccaagggttattttcagactttttgactacacagatgctccagagggc
cctgttatgccaggcagtcattctgttgagagatttgtgatagaagaaaacttgcattac
atcatcaattcatattggaaagaaagaaaaagctgtgccgcacagctgttgagttatcca
gggaagaacaaaattcctttgaactaccacatagttgaagtaatctttgcagagctgttt
cagcttcccgtgcctccacatattgatgtcatgtatacaacacttctgattgagctttgt
aaacttcaacctgggtctctaccacaagttcttgcacaggccactgagatgttctatatg
cgtatggattcaatgaatacaacctgcattgacaggttaattaactggttctcccatcac
ttgagtaactttcagttccgctggagctgggaagattggtcagattgtcttactcaggac
cttgataaacctaaaccaaaatttgtaaaagaagttttagaaaaatgcatgagactctct
taccaccaaagaatactggatattgtccctgctgccttttctgcattgacaccgccaact
ccagcgtgcatttataaatatggagatgaaagcaatagctctcttccaggatatccagtt
gctatcagtttgactaatgccatcaaaagcaagggaacaaatgaagaaatcttcagcatt
ttaaaagatgttcccaatcctaatcaggatgatgatgatgatgaaaggttcagtttcaac
cctctgaaaatagaggtttttgtacagactttgcttcatttggcagccaagtccttcagc
cattccttcagtgctctggcaaagtttcatgaaatcttcaagacattagctgaaagtgat
gaggggaagctacatattttgcgagttatgtacgatgtttggaaaaaccatccacagatg
attgctgtactgattgacaagatgattcgaacacagattgttgattgtgctgctgtagca
aactggattttctctccagagctctctcatgatttcacaaggttgtacatttgggaaatc
ttacattctacaatacgtaaaatgaataagcatgtgcagaagatccagagggagctggag
gaaaccaaaggaaaattggaaaagcagcacaagcgtagagatagtgatgatgacgacgat
cggagcagtgatagggaagatgggccactggaagaacagattgagcgactgcaggagaaa
gtagagtctgctcagagtgagcaaaagaatctcttccttgttatattccagcgcttcatt
atgatccttactgagcacttagtgcgatgtgaaacaggagggattgatgtgattacacct
tggtataagaactgtatagaaaggctgcagcagatattcttacagcatcaccagataatt
catcagtacatggtgactttagaaaaccttttgttcacggcagagttggatcaccacatc
ctgactgtattccaacagttttgtgctcttcagacttaa
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