Geotrypetes seraphini (Gaboon caecilian): 117346934
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Entry
117346934 CDS
T09159
Symbol
TNR
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117346934 (TNR)
04518 Integrin signaling
117346934 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117346934 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117346934 (TNR)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117346934 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Fn3_Dep-1_3rd
Pur_ac_phosph_N
EGF_2
Fn3_Dep-1_2nd
Fn3_VIN3
FN3_Tor_3rd
DUF7949
Lzipper-MIP1
TSC22
T7SS_ESX1_EccB
Motif
Other DBs
NCBI-GeneID:
117346934
NCBI-ProteinID:
XP_033773109
UniProt:
A0A6P8NQT1
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All DBs
Position
12:89649226..89860856
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AA seq
1356 aa
AA seq
DB search
MGTDGGALVLRNMFIGVNLILLWSILKPLDCQVDVLSEQVTENTEEGEGNFVNRSVPIKD
KPMVFNQVYNINVPLESICSTEVETPAGQEMNTEEEKVTEYMEQTSDSKSGVIFTHRINI
PKQACVFSDLPKTIQQLLTRIEMLEREVSILRNQCSANCCQESIATGHLDYIPHCSGHGN
FSLETCGCICTDGWGGKNCSEPHCPMACSGRGICMEGECVCDADYSGDDCSEVRCLTDCS
SHGLCVDGECVCEEAYTGEDCRDFRCPNDCSERGRCANGTCVCLEGYVGEDCGQLRCLNA
CSGRGVCQQGVCACEEGYVDQDCSAVAPPKDLRMVGVSDRSVDLEWDGPMVVTEYVIAYQ
PMIPGILQLQQRVPGDWSTATIKELEPGLTYNISVYSVINDIISIPVSAKVTTHLPSPTG
LKFKAITETTVEMQWEPFSFTFDGWEISFIPKNNEGGVIAQLPSSVTSFNQTGLKPGEEY
TVTVVALKEQARSPPISASVSTVIDGPTKLQVRDVSDTVAFVQWIPPRAKIDFLLLNYGL
VDGEGGKTSFRLQPPLSQYSMQALRPGSHYEVSVTGVRGTTFSKSAATYFSTEIDAPKNL
HVISRGSSSLELEWDNSEADVEAYQVVYSTLAGDQYDTLRIRKNAGLTTRATLADLVPGT
EYGIGISALMEQQQSIPATMNARTELDSPRDLMVTASTDTSIYLLWTKAKGPIDHYRISF
TAASGMASEVTVPKEMSAFNLSNLEPATEYTISVVAERGRQQSSETTVDAFTGFRPITQL
HFSQITSSSVNVSWSDPSPPVDLFILNYNPRDHGETLQVSLDALTRHTTLSGLESSTEYI
MTLVAMHGMVTSEPVVGSITTGIDPPRDISISNVTKDSVTVFWSPPTSSFDHYRLSYQSA
EGRVDSIVISSNLTEYTLSHLQPATEYDINLNTMRGQEESQHISSIVQTAMDSPTGLTAF
NVTPTKAVLRWNPPVAEVENYIIVLTHYPTAGETIVVDGINQEWQLINLLPSTSYSVTMY
AINGPLTSKTASTNFSTSLDAPTNLTAAEVTWRSVLISWQPSIADIENYVLTFKSTNGSR
KELIVDAEDTWIRLEGLAEKTEYTVQLLSAQATTKSGIISTVFTTGERLFAYPQDCAQHL
LNGDNLGGIYAIYINGDINQKVHVYCDMTTDGGGWIVFQRRQNGLTDFFHRWDVYSIGFG
NLEDEFWLGLDNIHKITSQGRYELRIDMRDGSEDVYAYYDKFSIGDARGSYRLRIGNFNG
TSGDSLSYHQGRPFSTKDRDNDAAVTNCALSYHGAWWFKNCHRTNLNGKYGESRHSQGIN
WYHWKGHEFSIPFVEMKTRPYSHHSISGKKRRSLYH
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgggaacagatggcggggccttggtcctgaggaacatgtttattggagtcaacttgata
ctgttgtggtcaatactcaagcccttagactgtcaagttgatgtgttatcagagcaagta
acagagaacacagaagagggagagggcaactttgttaaccgcagcgtacccatcaaagac
aaaccgatggtctttaaccaggtctacaatattaatgtccctttagaaagcatatgctca
actgaagtagagactccagctggccaggaaatgaataccgaagaggagaaagtgactgag
tacatggagcagacatctgacagtaaaagtggggtcattttcacccaccgaataaacatt
cctaaacaagcttgtgtgttctccgatctaccgaagaccatccaacagctgctgaccaga
attgagatgctggagagggaagtgtcaatactacggaatcaatgcagtgccaactgctgc
caagaaagcatagcaacaggtcacttggactatatccctcactgcagcggtcatggcaat
ttcagtttggaaacgtgtggctgcatctgcactgacggctggggtggaaagaactgctca
gagccccactgccccatggcttgctctggtcggggtatctgcatggagggcgagtgtgta
tgcgatgcagactacagcggggatgactgctcagaggtccgctgtctcacagactgcagt
tcccatggtctgtgcgtggatggtgagtgtgtctgtgaagaggcctatacgggtgaagac
tgcagggactttcgctgtcccaatgactgctcagaaagggggcggtgcgccaatggaacg
tgtgtctgcttggaaggctatgtaggtgaggactgtgggcagctgaggtgcttaaatgcc
tgcagtggccggggagtctgccaacagggagtatgtgcctgcgaggaaggatatgtggac
caggactgctcagcagttgctccacctaaagatttacgaatggttggtgtcagcgatcga
tcagtggatttggaatgggacggacccatggtggtgacagaatacgtgattgcctaccag
ccaatgatcccgggaatcctccagctccaacagcgtgtgcctggggactggagcactgct
accattaaggaactggaaccaggcctcacttacaacatcagtgtttactctgttatcaat
gacatcataagcatcccagtcagtgctaaggtgacaacccatctcccatctcccacgggg
ctaaagtttaaagccatcacagaaaccacagtggaaatgcagtgggagcctttctccttt
acctttgatggctgggaaatcagcttcatccccaagaacaatgaaggtggggttatcgct
cagctcccaagcagtgtcacttccttcaaccagacagggctaaagcccggagaggaatac
acagtgactgttgtagctttaaaggaacaggctaggagcccacccatttcagccagcgta
tcaactgtgattgatggccccacaaaactccaggtacgagacgtctcagacacagttgcc
ttcgtgcagtggatacctccccgggctaaaatagattttcttctactgaactatggattg
gttgatggggagggtgggaagacctcattccggctgcagcctcccctgagccagtactca
atgcaagctctgagacctggatcacactacgaagtgtctgtcactggagttcggggtaca
acattcagcaagtctgccgccacctacttttcaacagaaatcgatgcaccaaagaacctg
catgtgatctcacgagggtcttctagcctggaactggaatgggacaacagcgaggcagat
gtggaggcctatcaagtggtatacagcaccttagcaggggatcagtatgatacacttcgc
atacgtaagaatgctggcctcaccacgcgagccaccctggctgatttggtgccaggaaca
gagtatgggatcggtatttcagcacttatggagcagcagcagagtatcccagctaccatg
aacgccaggacagagctggacagtcctcgtgacctcatggttacagcttccacagataca
tctatctaccttctctggacgaaggccaagggaccaatagatcactaccggatctccttt
accgcagcatcgggcatggcctctgaagtcaccgttcccaaggagatgtcagcatttaac
ctgtccaatctggaacctgccacagaatatactatttctgttgttgcagagaggggacgc
cagcagagttcagaaactacagtggatgcattcacaggtttccggccaatcacacagcta
catttctctcaaatcacttcttcgagtgttaatgtctcctggagtgatccttctccacct
gtggacctgtttatcttgaactataaccctagagaccatggagagaccctgcaggtgtca
ttagatgcgttgacaaggcataccactttatctggcctagagtcatctacagagtacata
atgaccctggtggctatgcatggaatggtcacctctgaacccgttgtgggttctatcaca
acaggaattgacccgccgagagatatatctatcagcaatgtgaccaaagactcggtgaca
gtgttttggagtccaccaacatcatcatttgaccactaccgcttgtcctaccagtctgct
gaagggagagtggacagcattgtgatcagcagtaacctcactgaatatacgctaagccac
ctgcaaccagccacggagtatgacattaacctaaacactatgcgtggacaagaggagagt
caacacatctccagcatcgtgcagacagctatggatagcccaacaggtttgacagccttc
aatgtcactccaacaaaagctgtgctgagatggaatccgccagttgctgaggtggagaac
tacatcattgtactgactcactatccaactgcaggagagaccatcgtcgtggatggaatc
aaccaggaatggcagctcatcaatctccttccaagcaccagctattctgtcaccatgtat
gccattaatgggcctctcacaagcaagaccgccagtaccaacttttccacatctttggat
gctcctacaaacctgacagcagctgaagtgacctggaggagtgttttgatatcctggcaa
ccgtccatagcagatatcgagaattatgtcctgacattcaaatcgaccaatgggagccgg
aaggagttaatagttgatgcagaggatacctggatacgtttagaaggccttgcagagaaa
acagaatatacagtgcaactgctgtcagcccaggcaacaaccaaaagtgggattatctct
actgttttcactacaggagaaagactgttcgcttacccacaagactgtgcccagcatctg
ctgaatggagacaatctcggtggaatatatgccatctatattaatggagacatcaaccag
aaggtgcacgtgtattgtgacatgacaacggatgggggtggctggattgttttccagaga
cggcagaatggcctgactgatttctttcacagatgggatgtttatagcattggcttcgga
aaccttgaggatgaattctggcttgggttggacaatatacacaagatcacatcacaaggt
cgctatgaactgcgcatagacatgagggatggctcagaagatgtctatgcttactatgac
aaattctctatcggagacgccagaggctcatacagactgaggattggaaacttcaatggc
acctctggggattccctctcctaccaccagggacgtcccttctccactaaggatagagat
aatgatgctgctgttaccaactgcgccttatcctaccatggtgcctggtggttcaagaac
tgccatcggaccaacctcaatgggaaatacggtgaatccaggcatagccagggtattaac
tggtatcactggaagggccatgaattctcgattccctttgtagaaatgaagacgaggccc
tacagccaccacagcatttctggaaagaagcgaagatccttataccactga
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