KEGG   Geotrypetes seraphini (Gaboon caecilian): 117347365
Entry
117347365         CDS       T09159                                 
Symbol
SMU1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
gsh  Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:gsh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gsh03041]
    117347365 (SMU1)
Spliceosome [BR:gsh03041]
 Complex B
  Other components
   Complex B specific factors
    117347365 (SMU1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_Gbeta Beta-prop_EML Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th NBCH_WD40 LisH_TPL Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Ge1_WD40 Beta-prop_NWD2_C Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_SCAP WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_IP5PC_F DUF7165 TFIIIC_delta VPS8_N Beta-prop_RSE1_2nd KNTC1_N Beta-prop_NOL10_N PROPPIN
Other DBs
NCBI-GeneID: 117347365
NCBI-ProteinID: XP_033774086
UniProt: A0A6P8PER2
LinkDB
Position
1:406197974..406414435
AA seq 513 aa
MSIEIESSDVIRLIMQYLKENSLLRTLATLQEETTVSLNTVDSIDSFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQD
GHYIISASSDGTVKIWNMKTTECCNTFKSLGSSAGTDITVNNVVLLPKNPEHFVVCNRSN
TMVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTMTGKLERTL
TVHEKDVIGIAHHPHQNMIATYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtcgatagagattgaatcgtcagacgttattcgtctcataatgcagtacctgaaggag
aacagtttgcttcggactttagccacattgcaagaggaaaccactgtgtctttgaatact
gtggacagtatagatagttttgtagcagatattaatagtggacattgggacacagtacta
caggctatacaatccttgaaactgcctgataaaaccctaattgatctctatgaacaggtg
gttttggagctgattgaacttcgtgagttgggagccgccaggtccctcttaaggcagact
gacccaatgatcatgttaaaacagacccagccagagagatacattcatctagagaatctt
ttggccaggtcctactttgatcctcgtgaggcctacccagatggtagtagcaaggagaaa
agaagagccgctattgcacaggcattggcaggtgaagtcagtgttgtgcctccatctcgt
cttatggcattgctgggacaggcattgaagtggcagcaacatcaggggctgctccctcct
ggtatgaccattgacttgttcagaggtaaagcagctgtgaaagatgtagaggaggagaaa
tttcctacacaactaagtagacatattaagtttggccagaaatcacatgtggaatgtgct
cggttttctcctgatggccaatatctggtcactggttcagtagatggatttattgaggtc
tggaacttcactacaggcaagatcaggaaggatctgaagtaccaggctcaagataacttt
atgatgatggatgatgcagtgctgtgtatgtgcttcagcagagacactgaaatgttggcc
actggagctcaggatggaaaaatcaaggtatggaagatccaaagtgggcaatgtttaagg
cgatttgagcgtgcacatagtaaaggtgtcacatgcctcagtttctcaaaggacagcagt
cagattctcagtgcttcttttgaccagactatcagaattcatggtttaaaatctgggaaa
acgctgaaggaatttcgtggccactcatcatttgttaatgaagctacttttacccaggat
gggcattacattatcagtgcatcttcggatggtacagtaaagatttggaatatgaagaca
acagagtgctgcaacactttcaaatcccttggaagctctgctgggacagacatcacagtg
aacaatgttgttctgcttccaaaaaacccagaacactttgttgtgtgcaacagatcaaat
accatggttattatgaatatgcaaggacagattgtaaggagcttcagctctggtaagaga
gaaggtggtgactttgtttgctgtaccctgtcgccacgaggggaatggatttactgtgtt
ggtgaagattttgtgctctactgtttcagcacaatgacaggcaagctggaaagaactttg
acggttcatgaaaaagatgttattggaattgcacaccatcctcatcaaaacatgattgca
acctatagtgaagatggccttttgaaactgtggaagccatag

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