Geotrypetes seraphini (Gaboon caecilian): 117347728
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Entry
117347728 CDS
T09159
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117347728 (FREM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
gsh04091
]
117347728 (FREM1)
Lectins [BR:
gsh04091
]
C-Type lectins
Lecticans
117347728 (FREM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Big_9
UL45
Motif
Other DBs
NCBI-GeneID:
117347728
NCBI-ProteinID:
XP_033774927
UniProt:
A0A6P8NGC6
LinkDB
All DBs
Position
1:complement(426533050..426813133)
Genome browser
AA seq
2196 aa
AA seq
DB search
MEPFRKCCVLAMMCVLLRCNSPSIVRVNPVIKAVKGQSVFLSAEDLQFSVPGQKDACKLE
VVMNEPITQRVGKLSPQVFDCHFLPHEVKYTHNGCPILDEDEVMLRVYRFTENETFTRTY
TLQVKLLEPDCNIIKMGSMALEVPEFYGLSNVIDKNVLTFDYNRKINLECTIRTTSLETL
LPSHGQVVTGEPEKEWPRGDQPHSFFLRPNHRTDPRCRSGGCLTGLKKISTVLKVSCEEF
LTMGVRYQHLSPPSPNVDYIPIRLDLTDTRSKSIYKSEYAWIPVHIRTAFPNQIPKAAFM
PSFILEVDQFILTPLTTATLDAEDSETPKNLLIFNITRPPLQGFITHLSDHTKSITSFTR
KDLNEMQIAYQPPNSSHTEKRNYEVEFEIHDVFFERSSRVTVRIFIRTADTNAPRVSWNM
GLDLLEGQSRPITWEQFQIVDNNDINAVRLVIVDGLQHGRITVKGGKGFMFTVDDIKAGA
VCYHHDDSDSMKDFVVFRIFDGHYSIRHKFPINILPKDDSPPFLITNVAIELCEGQTVLI
QASMLQASDMDSSDDYIHFNITRPSQAGEIVKKPGADAIGYPVTGFLQRDLFNGIIYYHH
LGGEIFEDSFEFVLSDSHDPPNLSEPQTVIMHITPVDDQLPKEATGTIRHLVVKETEIIH
LTRKQLHFVDMESPERELLYTISTPPFFTSADGHLDGGKLIMVDTLPKLVKDPTVPMLRS
FTQHAVNHLKVAFMPPMLDIGPDPQHVQFVFSVSSQHGGTLHGICFNITILPVDNQAPEV
FTNYLEVEEGGMCTVTIGHILISDVDTKEENIKVQLKRRPLYGAMQLDGFVMKEGDIFTV
GDLGISKLRYQHDGSEVLHDDFVCAATDGANSAEFILQVKILPVNDEPPIMKVDLIPILH
CPEGEKAAITSQYLYATDADSDDSKLMFMIARQPRHGVVQKEGTTVDHFSQSDVVSGTVT
YQHTRGEIGLKPCFDTISLIVSDGEGSPMINTCCYEESLSPPVPHHDSFPVYDLNITVFP
VDNQPPSITIGTMYIVDEGFSAPITSDHLFVNDPDTEMVNLEIILVSPPQFGYIENTLPS
PGFEKSNVGISIASFQWMHLEALHINYVQSRHQRMEPTTDHFMLCASDGKHHSTEIPFQV
IINPTNDEVPEFLARNFTVQEGQMKELDPSIINVVDLDIPQNYLTFVVTQQPHHGLILNG
VYDHDITRYKRLINSHQIHELPVHDFSMDLLTHGMKLMYLHDDSENLADEFTILLSDGKH
KVLRTISVDVIPVNDEKPVLVKNDELEVKMSETCIISSAVLSAEDSDTSRERIQYVFERM
TDNGHLQSKVGENWVTLQVGMRCTQEDIDKNLIRYVHTGALGSKSRDSFSFHLWDGENQS
PALHFHITVKDTEKGNIAVFVRSLSVLKGDRGIFTTDILLAMDGTDRPEELLYVISSPPK
YGQVEYIGYPGVPITSFSQMDVAAQVICYVHTSKTAAVKDIFRFFVSNGLRSKHGTFEIT
LESTDQALPDVSRNRGLRLLEGAMALISPDVLQLSDPDTPSQNLTFLLVQVPQHGQLYRR
GSILLQHSFTQQDVDSMDIAYKHGGGDVQIDSFTFTATDCSNQGFTVDGQEPVEPVVFTI
QIETLDRIAPRITHLRCPSEVEHLKDGRHGIYITSRVLKASDPDTEDDKIIFNIVRGPRF
GYLENATSGGFIQERFTQKDLNGKVILYIINPSLDLTSDDLEVQISDPIGNTAAPQILEL
TWSCIEWLQDEYDVCETTEMLPLKIIRRGNPTDSAFVAVKVNEISAVLGKDFSPSPSRLI
QFDPGVSARTWNVAITHDGLEEEEEVFEVLLNSPVNAVLGTRTKAIVKIVDPRGGQCSSL
HLSNPKKNIWGTGTLFPASTVSRPSGPGAFQLEEISLSSPKETTMTHNRGDLPQEFDSLS
LARRRLRVNGNGNTVHPSSVFRNETNVIFKYHGIVSLQVEDDVSPSNLSKAKEIVANQGW
AKWEAAPSLNIDVPQADKAVLMTASRHRTQDQSLLFPKKCTPDIKGLLHFQENIQKLFQC
DGISWKVWHASDKVRIIEEKHDWDISAKKCPSGWTHHSDSCYFLVTKQKANWNTAARACR
EQYLGILVTVVSQKQMEWLWDFSGRKPFWIGLNDQTRANHWEWSSGEPVTYTNWRRGWPH
PARKRSSCTLVYRRGKWQTKDCRKGKGHHYVCSRKL
NT seq
6591 nt
NT seq
+upstream
nt +downstream
nt
atggagccattcaggaaatgctgtgtacttgcgatgatgtgtgtcctgctgaggtgcaat
agtccatccatcgtcagagtcaaccctgtgattaaagcagtgaaaggccagtctgtcttc
ctgtcagcagaagacctgcaattctctgttcctgggcagaaagatgcatgcaaactggaa
gttgtaatgaatgaaccgataacccagcgggtcggcaaactgtcaccgcaggtctttgac
tgccactttcttccccatgaagtaaagtatactcataatggctgccccattttagatgaa
gatgaagtcatgctcagggtttacagatttacagaaaatgagacattcacaagaacctat
acccttcaggtgaagttacttgagccagactgtaacatcatcaagatgggatcaatggca
ctggaagtccctgaattttatgggttgtctaatgtgattgacaagaatgtgcttactttt
gactataatcgtaaaattaacctagagtgcaccatccgaacgacttccttggaaaccctt
ctaccatcacacggtcaggttgtgactggagaacctgaaaaagaatggccacgtggagat
caaccacacagttttttcctcagacccaatcacagaacagatccaaggtgcagaagtgga
ggctgcctcactggcctgaagaaaattagcactgttctgaaagtgagttgtgaggagttt
ctgaccatgggtgttagatatcagcatctcagccctccctcaccaaacgtcgattacatt
cctattagactggatctcacagacaccaggagcaagtctatatataagtcagaatatgct
tggataccagtgcacatcagaactgcgtttccaaatcagatccccaaggccgccttcatg
ccctcattcatactggaggtagatcagttcatcttgaccccattaacaacagcaactctc
gatgctgaagacagtgaaacaccaaagaacttgctgattttcaatattacccgaccacct
ctgcagggatttatcacccatctttctgatcacaccaaatctatcacatcctttactcgg
aaggacttgaatgagatgcagatagcttaccagcctccaaatagcagccatacagagaag
aggaactatgaggtggagtttgagatccatgatgtcttctttgaacgaagttcccgcgtt
acagtccgtattttcatcagaacagccgacacaaacgctcctcgagtttcttggaatatg
ggtcttgatctcctggaaggccaatctcgaccaatcacttgggaacaatttcagatagtt
gacaacaacgacattaatgcagttcggcttgttattgtggatggtttacagcatggacga
attactgtgaaaggcggtaaaggcttcatgttcacagtagatgacatcaaggctggagct
gtttgctaccatcatgacgacagcgatagcatgaaggattttgtggtcttcaggattttt
gacggtcactacagcatccgccacaagttccccatcaacatcttgccgaaggatgacagc
cccccgttcctcattaccaatgttgctattgagctctgtgaagggcagactgtcctgata
caggcctcaatgcttcaggcttctgacatggattccagtgatgactacatacacttcaac
attaccagaccttcccaggctggagaaattgttaagaaaccaggagcagatgctataggc
tatccagtcactggcttcctgcagagagacctttttaatgggattatttactatcatcac
ctaggaggagaaatatttgaagattcatttgagtttgttttgtctgacagccatgaccct
ccgaatctctcagaaccacagactgtgattatgcacatcactccagtcgatgatcaactt
ccgaaggaagccaccgggacaataaggcatctagtggttaaagaaacagaaattattcat
ctaactaggaaacagctacattttgtggacatggagtcacctgagagggaactcctttac
actataagcacacctccttttttcacttctgcggatggccatttagatggtggcaagctg
attatggtggatactttacccaaattagtgaaagatcctactgtccccatgctgaggtca
ttcactcagcatgctgtgaaccacctgaaagtggctttcatgccccctatgctggacata
ggccctgatcctcagcatgttcagtttgttttctctgtcagcagccaacacgggggcacc
ttgcatggaatctgcttcaatattaccatccttccagtggacaatcaggctccagaggta
tttacaaactatctggaagtcgaagaagggggaatgtgcaccgtgacaataggccatatt
ctgataagtgatgtagacaccaaagaggaaaacatcaaggtccagctcaagaggaggcca
ttgtacggagccatgcaactggatggatttgtcatgaaagagggtgacatcttcacagtg
ggtgaccttggcatctccaaactcaggtaccagcatgatggctcagaggttcttcatgac
gattttgtctgcgcagccacagatggtgctaattctgcggagttcatccttcaagtcaag
atactgcctgtaaatgatgagcctcccatcatgaaggttgaccttattccaatcctacat
tgtccagaaggagaaaaggctgccatcacgtctcagtacctttatgctaccgatgcagac
agtgatgactcaaagctaatgttcatgatcgctcgacagccccgccatggagtggtacag
aaagagggcaccacagtggatcacttctcccaatcagatgttgtttcaggaactgtgacg
taccaacacactagaggggagatcggtctgaagccttgttttgacaccatctctcttatt
gtatctgatggcgagggcagcccgatgataaatacttgctgctatgaggaatctctctct
cctccagtgccacaccatgactcctttcctgtgtacgacctcaacattactgtgtttcct
gtggacaatcaaccaccatctattacaattggtactatgtatattgtggatgagggattc
tcagctcctataaccagtgaccatttatttgtcaatgatcctgatactgaaatggtcaac
cttgaaattattttggtttcgcctccccagtttggctacattgagaacacattgccatct
ccagggtttgaaaagagcaacgtgggtataagcatagcttcatttcagtggatgcatttg
gaagccttacatattaactatgtccagtccagacaccaaaggatggagccaactacagac
cacttcatgctgtgtgctagcgatggaaaacaccactcaacagagataccatttcaagtc
atcatcaaccccaccaatgatgaagtccctgaattcctagcaagaaactttactgttcag
gagggtcagatgaaggaacttgatccctccatcattaatgtggttgacttggatatcccc
cagaattacttgacatttgttgttacccagcagccacatcatggactaattttaaatgga
gtgtatgaccatgacatcacccgttacaaacggttaatcaacagtcatcaaattcatgaa
cttccggtgcatgacttttccatggatcttctcacacatggaatgaaactgatgtatctg
catgatgactctgaaaacttggccgatgagttcacaatcctgttgtcagatggaaagcac
aaagtcctcagaaccatttcagtagatgtcattcctgtgaacgatgagaagccagtgctt
gtcaagaatgatgagttagaggtgaaaatgagtgaaacatgtattatttctagcgcagtt
ctatcagcagaggatagtgatacctctagagagagaattcagtatgtgtttgaaagaatg
acagacaacggacatctccaaagcaaggtaggagagaattgggtaactctccaagtaggg
atgaggtgtacccaagaggatatcgataagaacctcattaggtatgtgcatacaggagcc
ctgggttccaaaagccgggatagcttctcctttcatctatgggatggcgagaaccagtca
ccagcgctgcatttccacatcacagtcaaagacactgaaaagggaaatattgcagttttt
gttagatcactcagtgtgctgaaaggggacagaggcatcttcaccacagatatcctcctg
gccatggatgggacagacagacctgaggagctgctttatgttatcagttcaccccctaag
tatgggcaggtggagtacattggctatcctggtgtccctattaccagcttcagccaaatg
gatgttgctgcccaggtcatctgttacgtccacaccagcaagaccgctgctgtgaaagac
atcttcagattctttgtcagcaatggtctgcggagcaaacatggaacctttgaaatcact
ctggagagcaccgatcaagccttaccggatgtgtccaggaacagggggctgcggttgctg
gaaggcgccatggcgctcatctctcctgatgttctgcagctttccgacccagacactcca
tctcagaacctcactttcctcctagtccaggtcccacagcatggccagttgtacaggaga
ggatccattctccttcagcatagcttcacccaacaagatgtggacagcatggatatagcc
tacaaacatggaggcggggatgtccagattgacagcttcacttttactgctacggactgc
agtaaccaaggcttcactgtggatggacaagagccggtggagccagtggtgttcaccatt
cagatagagactttggaccgaatcgctccaaggatcactcacctccgctgtccttctgag
gtagagcacttgaaagacgggcgtcatggcatttatataacctcgagggttctaaaggca
tctgatccagacacggaggatgacaagatcattttcaacattgtgcgaggcccccgcttt
ggctacctggagaatgcaacttcaggtgggtttatccaagagaggttcacccagaaggat
ctaaatggcaaagtaattctttacatcatcaacccctccttggatttgacttctgatgac
ctggaggttcaaatctcagatcccataggaaacacagcagctccacaaatcttggagctg
acatggtcttgcattgaatggctacaggacgagtatgatgtatgtgaaactacagaaatg
ttgcctttgaaaatcatcagacgggggaaccctacagactctgcatttgttgctgtcaag
gtgaatgaaatatcagctgtgctgggaaaggatttcagcccaagtccatccaggctaatt
cagttcgatccaggggtgtcagctaggacctggaatgtagcaattacccatgacgggctg
gaggaggaggaggaggtctttgaagtgctcctgaactctcctgtgaacgcagtacttggc
accaggacaaaagccatagtgaaaattgtggaccccagaggaggtcaatgtagttcttta
catttatccaatccaaagaagaacatctggggaacaggtaccctatttccagcttccaca
gtctccaggccatctggtcctggtgcttttcagctagaagaaatctctctttcatctccc
aaagagacaacaatgacacacaataggggagatctaccacaggaatttgactctcttagt
ctggcaagaaggcggttaagagtcaatggaaatggcaatacagttcatccatcctctgtc
tttagaaatgaaaccaatgtcatctttaagtatcatggcattgtatcactccaagtagaa
gatgatgtttcaccttccaacctaagtaaagctaaagagatcgtggccaaccaagggtgg
gcaaagtgggaagcagctccttctctgaatattgacgtcccacaagcagacaaggcagtg
ctaatgactgcatcccgccacagaactcaggaccagtccctgctcttcccaaagaagtgc
actccagacataaaagggctcttacatttccaagaaaatatccagaagttatttcagtgc
gatgggatttcatggaaagtgtggcatgcctcagacaaggttcgcattattgaagagaaa
cacgactgggatatcagtgccaaaaaatgtccttctggttggacgcatcacagtgacagc
tgctatttcttggtcaccaagcagaaagccaactggaatacagctgctcgagcctgccgt
gaacaataccttggtatactggtgactgttgtttcccaaaagcagatggaatggctctgg
gattttagtggtagaaagcctttctggatcggcttgaatgaccaaacaagagccaaccat
tgggagtggagcagtggagagcctgtcacatatacaaactggaggagaggctggcctcat
cctgcaagaaagagaagcagctgcactctagtctaccggcgaggaaagtggcaaactaag
gactgcagaaagggcaaaggtcaccactatgtatgctcaagaaagctataa
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integrated database retrieval system
