Geotrypetes seraphini (Gaboon caecilian): 117347916
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Entry
117347916 CDS
T09159
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117347916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gsh03009
]
117347916
Ribosome biogenesis [BR:
gsh03009
]
Eukaryotic type
Pre-60S particles
RNases
117347916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
Nab2-like_zf-CCCH_
MG280
THOC7
Motif
Other DBs
NCBI-GeneID:
117347916
NCBI-ProteinID:
XP_033775327
UniProt:
A0A6P8NHH2
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All DBs
Position
1:complement(432517914..432707650)
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AA seq
1183 aa
AA seq
DB search
MCLCMLRPAGYFRDIPCPFDQAAPGGCLRPHCQYKHSRGDWREPRPLVVAAATTAACPSL
VSSTRRTLELERINKEIEAVKTEMEENQKKLVQYKQEAKNDENINIGTNLIDINGNHPCC
ADEQHIGDSKGSHNATSSSSRKVLHSVSSEKYVVDHRCPATDLEYDPILNYSADLLNSFT
KKEAENKLKPKRFKISGHENGGSSKCKRSRTASPVRLEINLQESDDDTLVIDVPPLKPMS
KKPRIKKNTDWNRREKECHLVHEENPPNNNLLKESMKVIETSKIEKNIASGPNDSNDLNK
TVAVQKQQNMPLMQNIYLSAVTEMNTFNESDVNLDNTKYSSIPKMSNICLAQKDKGQLVH
EENPPNNNSLNESIKVIETSKIEKNIASGPNDNDLNKTVAVQKQQNMPLMQNIYLSDVTK
TNTFNESGDNLDNTKYSSIPKMSNICLAQKDKCENDEQKCAQSESIQTDLQQAKTGHKNF
CNSKRPKINAHRDSSKEGMSQMHADFKVRDLEKVKGMSGSKKATILDSTHLNETTSLVDQ
LSFFNSVPCETEVTHSLYNKDGNGALCTKVKENEIIVLDSSSGDCTDVSDHDAEESDSDD
PMEECLRIFNEFAESELQKEELPKQVPVEEHIEMDVSDSKTMDKISGQKKRIAHPAKCNV
KSNREILVPFKVSAPHQIFNSRILQAQQQAVQITAAVKSGQAFVAATSMQHMSGFPATGP
HYEPEIAVCINLLDIQPAVSSGNHSYGVFQGHSIAAVTCRPNIPLRKTIQMPPPKVVTRR
RPSVIPEIGSKVPHDTRQRYVNFFVEESLKTCSTVEEAFDKALSEEKAIYDRCGSKNMYL
NIAVNTLKKLRDQGNLSSDYLQLAGRENNTRSRKQDEKNDVTGVIFYKLIKVYALSEEQL
EENGYPRINPNKPGSAIICTGVTKNFLSDGLRRICCRCGETYSVTSKGKHVRKEECNYHS
GRVLRHKVPGGVETRYSCCEAVVGTPGCQVAKLHVHDGQKENLDGFMKTFMKQLPSDGNP
GVFAVDCEMCYTTQGLELTRVTVVDSSLQIVYDTFVKPANEIIDYNTRFSGVTEDDLKNI
TTSIRDVQAILLNMFSAESILIGHSLENDLYALKLIHDNVVDTSVVFPHRLGLPNKRALR
NLIADYLRRIVQDDVGGHNCVEDARACMELMIWKVKEDTKGRR
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttgtgtatgttgcgtccggcgggctacttcagggatataccctgcccttttgac
caggctgcgcctgggggatgtttgcggccccactgccaatacaagcatagtcgaggggac
tggagggagccccggccgcttgtggttgctgctgctactaccgccgcctgcccttctctt
gttagtagtactcggcgaaccttggaacttgaaagaattaataaagaaattgaggcagtg
aagacagaaatggaagaaaaccagaagaaacttgtccagtataagcaggaggcaaaaaat
gatgaaaatatcaatattggtactaatttgattgacataaatggaaatcatccatgctgt
gcagatgaacagcatattggagattcaaaaggcagtcataatgcaacttctagcagctct
aggaaagtccttcactcagtttctagtgagaaatatgttgttgatcaccgctgtccagca
actgacctggaatatgacccaatacttaactactctgcagaccttcttaattcctttacc
aaaaaagaggctgaaaataagttaaagcctaagcgttttaaaattagtggacatgaaaat
ggaggcagctccaagtgtaaaagatcaagaactgcatcaccagtcaggcttgaaataaat
cttcaagaatctgatgacgatacccttgttattgatgtcccaccattaaaacctatgtct
aagaaaccgagaataaagaagaacactgactggaatcggagggaaaaagagtgtcatctt
gtgcatgaagaaaatcctccaaataataatttactgaaagagtctatgaaggtgatagag
acaagcaaaattgagaaaaacattgcctctggaccaaatgacagcaacgacttgaacaaa
acagttgcagttcagaaacagcaaaatatgccattgatgcaaaatatttatctgtcagct
gttacagaaatgaacactttcaatgaaagtgatgttaatcttgataatacaaaatattct
tccatacctaaaatgagtaacatttgtttagcacagaaagataaaggtcagcttgtgcat
gaagaaaatcctccaaataataattcactgaatgagtctataaaggtgatagagacaagc
aaaatagaaaaaaacattgcctctggaccaaatgacaatgacttgaacaaaacagttgca
gttcagaaacagcaaaatatgccattgatgcaaaatatttatctgtcagatgttacaaaa
acaaacactttcaatgaaagtggtgataatcttgataatacaaaatattcttccatacct
aaaatgagtaacatttgtttagcacagaaagataaatgtgaaaatgatgaacaaaaatgt
gcacaatctgaaagcatacaaactgatcttcagcaggcaaaaacagggcataagaacttc
tgcaatagcaaaaggccaaaaatcaatgcacatcgagacagttctaaagagggaatgtca
caaatgcatgctgattttaaagttagggatttagaaaaagttaaaggcatgtcaggaagt
aaaaaagctacaatactggatagtacacatctcaatgaaaccacatctttagtagaccaa
ttaagtttctttaacagtgttccttgtgaaacagaagtgacacacagcttgtataacaag
gatggtaatggtgctttatgtacaaaagtcaaagaaaatgaaatcattgtattagattca
tcatctggagactgcacagatgtttctgatcatgatgcggaagagtccgattcagatgac
cccatggaagaatgcctccgaatttttaatgaatttgctgagagtgaattacagaaggaa
gaactacctaagcaggttcctgtggaagaacatattgaaatggatgtatccgatagtaaa
acaatggataagatttctggccaaaagaaaagaattgcacatcctgcaaaatgcaatgta
aaatcaaatcgagaaatacttgtaccattcaaggtatctgctccacatcaaatatttaat
tccagaattctacaagctcagcaacaggcagtgcaaataacagccgctgttaagagtgga
caagcttttgttgctgccacttctatgcagcacatgtctggattcccagccactggtcca
cactatgaacctgagatagcagtatgcataaacttgttggatattcagccagctgtatca
agtggaaaccattcatatggagtctttcaaggacattccattgcagctgtaacctgcagg
ccaaatattcctctcagaaaaacaattcaaatgccacctcctaaggttgtaactcgaagg
agaccttcagtaattcctgaaattggatctaaagttccacatgatacacgtcaacgatat
gtcaatttctttgttgaagagtctttgaaaacttgttcaactgtggaagaagcttttgat
aaggctttgtctgaagaaaaggcaatttatgatcgttgtggaagcaaaaatatgtacttg
aatattgcagtgaatactcttaagaaactgagggatcagggaaatctatcttcagattat
ttacagctggctggtagagagaacaatactagatccagaaaacaggatgaaaaaaatgat
gttacaggagtcattttctataaactcattaaagtctatgcactgagtgaagagcaatta
gaagaaaatggttatccccgaataaatcctaacaaaccaggcagtgccataatatgcaca
ggagtaacaaaaaactttctatctgatggtcttagaaggatttgttgtcgctgtggtgaa
acatattctgtaacttctaaaggaaagcatgttcgtaaagaagaatgtaactatcattct
gggagggtgctcagacacaaagtgcctggtggtgtggaaactcgctatagctgttgtgaa
gcagtagtagggacccctggatgccaagttgcaaagctccatgttcatgatgggcagaag
gaaaacttggatggctttatgaagacatttatgaaacagctgccttctgatggtaatccg
ggggtatttgcagtggattgtgaaatgtgctacacaactcaaggtctggagcttactaga
gtgacagtggttgattccagtctacaaattgtgtatgatacttttgtaaagcctgctaat
gaaataatcgactataatactagattttctggcgtgactgaagatgacttgaagaatata
accacttccattcgagatgttcaagcaattttgctaaatatgttcagtgcagagtcgatt
ttaattggacacagtttggaaaatgatctttatgctctcaagctaatccatgacaatgtt
gttgacacatcagtagtgtttcctcatcgtttgggcttacctaataaaagagctcttaga
aatctaatagcagattacctcagacgcattgttcaggatgatgttggtggtcataactgt
gttgaagatgcaagagcttgtatggaattaatgatttggaaggtcaaagaagacaccaaa
ggaagaagatga
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