Geotrypetes seraphini (Gaboon caecilian): 117348345
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Entry
117348345 CDS
T09159
Symbol
BLM
Name
(RefSeq) Bloom syndrome protein isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03440
Homologous recombination
gsh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117348345 (BLM)
03460 Fanconi anemia pathway
117348345 (BLM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsh03032
]
117348345 (BLM)
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117348345 (BLM)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117348345 (BLM)
DNA replication proteins [BR:
gsh03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
117348345 (BLM)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
117348345 (BLM)
Bloom's syndrome complex (BTR)
117348345 (BLM)
FA (Fanconi anemia) pathway
117348345 (BLM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BLM_N
DEAD
Helicase_C
RecQ_Zn_bind
BDHCT
HRDC
RQC
IL17R_D_N
Motif
Other DBs
NCBI-GeneID:
117348345
NCBI-ProteinID:
XP_033776246
UniProt:
A0A6P8NYI8
LinkDB
All DBs
Position
14:76267558..76366995
Genome browser
AA seq
1330 aa
AA seq
DB search
MSHIPQNNLQRQLEFHSAKGHLQKLALQKPRNISFTFKKKSLSNNAAANDLFKVKYLSSL
KEQNGNVCKKFSLTKSLPSLINLKEQNKGTERQHTAVLEFQDTIQQETPPPSKHQKLTDS
PSKEAHFNSSFSSVISLEDWDDIDDFDTPCKEKNSRSFVPVKSCPAPVKCTGHTNAARPW
MFKSTCEKQGLAVAWANASSVPQNRLVGSLDSSEVSLLCVDDSISDTFKEVEVKNTRSSA
VGTDDAQSKVEGKTCKETQWSSGEKDLASQQHALYIVMERICELVDALPSTELKTLSCGK
DLLLQRGLRRRIVADWTERQISSSDPGIQHVMENSCLSRSSLSMDSSTPLPSLHPVPRNS
LSLDSISAHSLQFNTLSFRTRTKDSSSQERTSSDLNHSDWTSTGTASIGLEICGTEKKLP
HSEGDDQAPFEFPSISSSFHTSLRTEEGKEEGTTSFLNISSITKSVTSQTQLNSSKEDIL
KPEEMVFDDVDCLDEDLQFVECSQNIPAARNVPASPFAAREHSIAKENILGPAAYSSSFQ
TDRWCSDSPLNKSSLGTTHERFRGFTFSHSKEMMKIFHKKFGLHHFRTNQLEAINASIFG
EDSFILMPTGGGKSLCYQLPACISPGVTVVISPLRSLIIDQVQKLTTLDIPATYLTGDKT
DSEARSIYMQLSKKDPIIKLLYVTPEKVCASTRLISTLENLYERQLLSRFVIDEAHCVSQ
WGHDFRPDYKRLNMLRQKFPSVPMMALTATANPRVQKDILNQLKMSRPQVFTMSFNRHNL
KYEVLPKKPKKIALDCIEWIKKYHPNDSGIIYCLSRHECDTIAESLQKEGLAALSYHAGL
SDSSRDYVQHKWINQEDCQVICATIAFGMGIDKPDVRYVIHASLPKSMEGYYQESGRAGR
DGEMSHCLLFYTYNDVTRLRRLIQMEREGTSQSKQTHFNNLYSMVHYCENVVECRRLHLL
AYFGENNFNPMFCKEHPDVACDNCCRKKNYKSRNVTEDVKSIVQFVQQHCAVKGKSKATG
RLTLNMMVDIFLGSKGAKVQTGIYGKGTAYSRHNAERLFRKLVLDRILDEELYITANDQA
VAYVSLGEKAQAVLHGYLQVEFQDVENISSIRKQSSGSSHVSQRQKMVKKCLEELTELCK
RLGKIFGVHYFNIFNTATIKRIAETLSPDPEVLLGIDGVTEDKLEKYGAELIDVLQKYSE
WTLPVDEDSQKSTVSSCGSTGGAVRQDNDQKQDCEQNKTSSYFRTKANRGTKRKNAAFFR
KSTKRRTASENQQSASRRNCKTGFSRTSSNSQPASLSTSSTSSYSRKPGFMAPPVPQNNR
RFLKPSYTLL
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacattcctcagaacaaccttcagagacagctggagtttcactctgcaaaagga
catctccagaaattggcactccagaaacccagaaatataagtttcacatttaaaaaaaag
agtctttctaataatgctgcagccaatgatttgttcaaggtaaaatatctctcatcatta
aaggagcagaatgggaatgtttgcaagaaattctccctaactaaatctcttccatctctg
atcaacctcaaggaacagaacaagggaacagaaaggcaacacactgcagtgttagagttt
caggataccatccagcaagagactccacctccttccaaacaccagaagctgacagattct
ccctccaaggaagcccattttaattcctcctttagctctgtgataagccttgaggactgg
gatgacattgatgactttgacacaccttgtaaagaaaagaactccagatcatttgtgcca
gtgaaaagctgtccggcccctgtgaaatgcacaggccatactaatgcagccagaccctgg
atgttcaaaagcacctgtgaaaagcagggtcttgcagttgcttgggccaatgcttcttct
gtccctcagaacagactcgtaggttcacttgatagttcagaggtatctctgctttgtgtg
gatgattccatttcagacacattcaaagaggtggaagttaagaacacaagatcatctgct
gttggaacagatgatgcccaaagtaaagtggaaggaaagacgtgtaaagaaacacagtgg
tcctcgggagagaaggacttggcttcccagcagcatgccctgtatatagtgatggaaagg
atttgtgagctagttgacgctctcccttccactgaacttaaaacattgtcctgtggaaaa
gatcttcttctgcagagaggcctcaggagacgcattgttgcagactggactgagaggcaa
ataagtagcagtgatcctggaatccagcatgtaatggagaactcctgcctttctcggagc
agcctgtcaatggactccagcaccccactgccttcccttcaccctgtgcctaggaactct
ttatccttggatagcatttctgcccattcacttcagttcaacacactatctttcagaact
agaaccaaagattcttcatcccaggagcgaacttcaagtgatttgaatcattcagattgg
accagcactggcactgcctctattggtctggagatctgtggaacagaaaagaaactaccc
cattctgaaggagatgatcaggcaccatttgaatttccctctatcagtagcagttttcat
acatctctaaggacagaggaaggcaaagaggagggtaccacttccttcctcaacatctcg
agtataactaaaagtgtaacatctcaaactcaactcaatagcagcaaggaagacatattg
aaacctgaagagatggtatttgatgatgttgattgcttggatgaagatcttcagtttgtt
gaatgttctcagaatattcctgcagccagaaatgttcctgcatcaccatttgcagcaaga
gaacattctatagcaaaagaaaatatacttggtcctgctgcatactccagttcctttcag
actgacaggtggtgttcagattcaccattgaataaatcatctttgggcactacacatgaa
cgcttccgtggtttcaccttttctcattctaaagaaatgatgaagattttccacaagaag
tttggactgcatcattttcgaaccaatcaacttgaagccataaatgcttctatatttggg
gaggacagcttcatcttaatgcccacaggtggtggaaagagcctgtgttatcagttgcca
gcctgtatttctcccggcgtcactgttgtgatttctccactcaggtccctaatcatagat
caggttcagaagctgacaactctggatattcctgcaacctatctgacaggagataagact
gatagtgaagctagaagtatctacatgcagctgtccaaaaaggatcccattataaaactg
ctctatgtaacgcctgagaaggtgtgtgccagtacccggctgatttctactctggagaat
ctttacgaacgccagttgctgtcccgtttcgttattgatgaggcacactgtgttagtcag
tggggtcatgatttccggccagactataagcgtttgaatatgcttcgccagaagtttcca
agtgttccaatgatggctctcaccgccactgccaatccccgggtccagaaggatatcctc
aaccagctgaagatgtccagaccacaagtgtttactatgagctttaacagacacaaccta
aagtatgaagtactgcccaagaagcctaagaaaatagcactagactgtatagagtggatt
aaaaaatatcatccaaatgattctggaatcatttactgcctttcccgtcatgaatgtgat
acgattgcagaaagtttacagaaagagggcctggctgcactctcttaccatgctggcctc
agtgactccagcagggattatgtgcaacataaatggattaatcaagaagactgtcaggtt
atctgcgcaacaattgcttttggcatgggcatagataaacctgatgtgcgttatgttatc
catgcatctcttccaaaatccatggagggatattaccaggaatcaggcagagctgggcga
gatggtgaaatgtctcactgccttctcttttacacttacaatgatgtcaccagattacga
agacttatacaaatggaaagagaggggactagtcaatcaaagcagacacactttaacaac
ctctatagcatggtgcattactgtgagaatgtggtcgagtgccgccggttgcatctgcta
gcttactttggtgaaaataacttcaatcccatgttttgtaaggagcatcctgatgtggca
tgtgataactgctgcaggaagaagaattacaaatcccgcaatgtaactgaagacgtgaaa
agcattgtgcagtttgtccaacagcactgtgctgtaaaagggaagtcaaaagcaacaggc
aggcttaccctgaacatgatggtagacatttttcttggaagtaaaggtgcaaaggttcaa
actggtatatatgggaagggaactgcctactctcggcacaacgctgagagattatttcgg
aagctcgtactggatcgaatcttggatgaagaactatatatcactgctaatgaccaagct
gtggcatatgtatctctaggagagaaggcacaagcagttttacatggatatttacaggtg
gaatttcaggacgtggagaacatcagtagcatcagaaagcagtcttctgggagcagccat
gtgtctcaaaggcagaagatggtgaagaagtgcctggaggagcttacagaactttgcaag
cggcttggcaaaatttttggtgtccattacttcaatatttttaatactgccactataaaa
agaattgcagagaccctgtcacctgatccagaggttttacttggaattgatggggtaact
gaagacaaactggaaaaatatggtgccgaattaattgatgtgctgcagaaatactccgag
tggactctcccagttgatgaggactctcagaaatccacagtctcatcatgtggaagcact
ggaggagcagttagacaggataatgatcagaagcaagattgtgagcaaaataagacctcc
agttatttcaggactaaagccaacaggggaaccaagagaaaaaatgcagcattcttcaga
aagtccacaaagaggagaactgcttctgaaaaccaacagtctgcttcacggagaaattgc
aagactggcttctcaagaacttcatcaaactcccagcctgcatcattgtctacaagtagc
accagctcttatagcaggaaaccaggatttatggcaccaccagtgccccaaaataacaga
cgcttccttaaaccatcctacacactcttgtaa
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