Geotrypetes seraphini (Gaboon caecilian): 117348555
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Entry
117348555 CDS
T09159
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117348555 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117348555 (PNLDC1)
Enzymes [BR:
gsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117348555 (PNLDC1)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117348555 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
117348555
NCBI-ProteinID:
XP_033776698
UniProt:
A0A6P8PPR6
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Position
14:59892515..59930897
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AA seq
531 aa
AA seq
DB search
MDIFGSQLEEALPVLQEQIQGCDFIAIDMEFTGLHSVLPHNLKPSLFDSADDWYRKVKSS
IQKFTVCQIGLSIFFKQKSNRFLSYSYNFYLFPLTFGSVDSEFSIQATSIQFLNEFGFDF
NKFMKDGISYLNEEQEERLKKDMLTGNWCPHSASEKDKLKEAIIAVTCWEATAGEGDSMR
LYNLRGFQMLMAQMVLRQALPDVWTVAVEGNELLVRKVNRQRRQQLENSSLDPCNRNRVL
LLARGFTNIFQSIVGAKKPLVGHNMLMDLLHLHHKFYRPLPDSYSEFKKNIHTLFPVLID
TKMLMRSVWKEFQFPHAATLLEIFDVLSSDMNPASPSCPLIEHATDCRKYVKNRCPHEAA
YDAFLCGSVLIHMTHLLLVTGQGETEELERSYSQYVKIASKYINQVNVIHAGFSCVNFSG
PDPCSHRPPTLLLTVRGWPDVDEEQIYRAFLSICRVDVKRLRGTQFLLLTTKFKGARAMQ
KEYKGHPNFQLCAYRYWRHSPLVCCVFSVCSVILAWSAVAFILGKSVPHHL
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggatattttcggcagtcagctggaggaagcccttcctgttcttcaggagcaaattcag
ggctgtgatttcatagcgatagacatggaattcacaggtctccattcagtcttgcctcac
aacctgaagcccagtctcttcgattcagcagatgattggtacagaaaggtgaagtctagc
atccagaagttcactgtatgtcagattggtttgtcaatattttttaaacagaaatcaaac
cggtttctctcctattcgtacaacttctatctcttccctttgacgtttggctctgtagac
tccgaattctccatccaggccaccagtattcagtttctgaatgagtttggctttgacttt
aataagttcatgaaggatggaatatcatatctgaatgaggagcaggaagagaggctaaag
aaagacatgttaacaggaaactggtgcccccatagtgcttcagagaaggacaagctgaaa
gaggccatcattgctgtgacgtgttgggaggcaactgcaggcgagggcgattccatgaga
ctgtacaacctcagaggttttcagatgttgatggcacagatggtactaaggcaggctctc
ccagatgtttggaccgtagccgtggagggaaacgagctgttggtgaggaaggtgaaccgg
cagcggcggcaacagctggagaactcctcacttgatccgtgcaacaggaaccgtgtcctc
ctcttagctcggggtttcaccaacattttccaatccattgttggtgcaaagaagccgcta
gttggacacaatatgttgatggacctcctgcatcttcatcataaattttacagacctctt
ccagacagctacagcgaatttaagaagaacattcataccttgtttcctgttctcattgat
accaagatgttgatgcgatctgtctggaaggaattccagtttccccatgctgcaactctt
ttggagatctttgatgtcctcagcagtgacatgaatccagcaagcccctcctgccccctc
atagagcatgcaaccgactgcagaaaatatgtgaagaaccgatgtccccatgaagcagcc
tacgatgcatttctttgtggatcagttctcatccacatgacacatctgctgctggtgacg
ggacagggtgaaaccgaagaactagagcgttcctattctcagtatgtgaagatagcgtcc
aagtatattaaccaagtgaatgtaatccacgctggattctcatgcgtcaatttctcaggt
ccagacccctgctctcaccgaccacctaccctgctgctgacagtacgtggttggcccgat
gtggacgaagagcaaatttaccgtgcatttctatccatctgcagagtggatgtgaagaga
cttagagggactcagtttctgctgctcaccaccaaattcaaaggtgctcgagcgatgcag
aaggagtacaagggccatcccaactttcagctttgtgcatatcgttactggagacactcg
ccgcttgtttgctgtgtgttcagtgtgtgcagtgtcatcctggcctggtctgctgtggct
tttattttggggaaatctgttccccaccacctctag
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