Geotrypetes seraphini (Gaboon caecilian): 117348629
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Entry
117348629 CDS
T09159
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117348629 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117348629 (PATL1)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117348629 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
117348629 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117348629
NCBI-ProteinID:
XP_033776857
UniProt:
A0A6P8NLA3
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Position
14:complement(939929..1048820)
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AA seq
772 aa
AA seq
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MYQYESLEDCPLDEDEDTFQILREEDEDIDQFNDDTFGAGAVDDDWQEEHVRLAELEDKT
QSELRQATCGPLLSSSAPLQDDKDFLGDHEENLAESLNKLVIDSELEDPAIMGAVHSRPS
LQLTKGLNCSIWDGPVVLRGLQASMLTEERTPVSVMKEYGVVEKPQPDQKESERDLSECA
LPRRSSSPIIGSPPVRAVPIGTPPKQVTMSTFSQQQILCPKAVHIRAPLHQRFSSASYND
QMSPNQHCTLSSASLLGHSFPPSGTSVLTQFQRAQQAAGRMSPSQFACVSGLVGPPLASM
NPKLLQSRVESMMSATTGFRPFFGAPTPLASSASPASNLQNLRPRPQVFRADTTHLHPQH
RRILYQRQLQNRNQHKNLNGVGGDQSHRGSHQDHLQKDPYANLMVQREKDWVSKIQMMQL
QSTDPYLDDYYYQNYFEKLEALSAAEIIPGEGPKKERTKLITPQMAKFEHDYKPVQFAGS
LGKLTVSSVNNPRKMIDAVVTLRTEDDETKEKQVRDKRRQTLFVIEKTFSLLLDVEDYER
RCLQSLDSERPSLMEDRKQKLVEIYENLRGNVTCNERLNEDHFVQIMCIRKGKRMVARIL
PYLSVQHAATLLRAIAHNLPFLIKKDIQDEVLPCLVRPCTVLLGHVSSQVVISLLQQLTN
LPHHSACVTQTEPATPHLTAVLQNKFGLTLLYQILARGEHILNSAASTDLLQDNQWTELV
FRVTRELLGIPSASLAKPVCTPSSLLSLFSRYVDTQHLNVLETKLKLVPGTR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtacgagtccctggaggactgtcctttagatgaggatgaagacacttttcag
attcttagagaagaagatgaagatattgaccagtttaatgatgatacctttggagctggt
gctgttgatgatgattggcaagaggagcatgtgcgactggccgagttggaggacaagacc
cagtctgagctgcggcaggcaacctgtgggccactgctgagcagcagtgctcctctccaa
gatgacaaggattttttgggggaccatgaagaaaacctggcagagagtctgaacaagctt
gtgatcgacagtgagctagaagaccctgccatcatgggtgccgtccattctcgaccctct
ctgcagttgactaaaggcttgaactgcagcatttgggatgggccagttgtgctacggggt
ctgcaagcgtctatgctgacggaggagagaacaccggtgtccgtcatgaaggagtatggc
gttgttgagaagccacagcctgaccagaaagagtctgaacgagatctctcggaatgtgcc
ttgcccagacgctcctcttcccccatcattggcagtcctccggtccgggcagtgcctatt
ggcacgccacctaagcaagtgactatgtctaccttcagtcagcagcagattttgtgcccc
aaggctgttcacattcgagcaccactgcaccagcgcttctcatctgcatcctacaatgat
cagatgtctcctaaccagcactgcactctttcgagtgcttcactgttgggccactcattt
cctcctagtggcacatctgttctcacacagttccagcgagcacagcaggcagcaggacgg
atgtctcccagtcagtttgcttgtgtgtctggtttggtgggccctccgcttgcttcgatg
aacccaaagctcttgcagagcagagttgaatcgatgatgtcagcaaccactggcttccga
cctttctttggggctcccacacctctcgcatcctctgcttctccagcatcaaatcttcaa
aatttgaggcctcgacctcaggtgttccgagcagatacaacacatctacatcctcagcat
cgacgtattttatatcagagacagctgcagaataggaaccagcacaagaatctgaatgga
gttgggggagaccagtctcatcggggatcccaccaggaccacctgcagaaggacccatat
gccaacttgatggtgcagcgggaaaaggactgggtgtctaagattcagatgatgcaactt
caaagtactgatccttatttggacgattattattatcagaactattttgagaagttagaa
gcattgtcagcagctgagatcatccctggagagggtccaaagaaagagaggacgaaactt
atcacacctcaaatggccaaatttgagcatgattacaagccagtgcaatttgcagggtcc
ctggggaagctgacagtttccagtgtgaacaatcctcgcaagatgattgatgctgtggtg
acgttgcggactgaggatgacgagacgaaggaaaagcaagtacgggacaaaaggcgccaa
actcttttcgtcattgagaaaacgttttctctcctcctggatgttgaggattatgagaga
cgttgtctacagagtcttgactcagagcgcccttctctgatggaggataggaaacagaag
ctagtggagatttatgagaatctaagagggaatgttacctgtaatgagaggttaaatgag
gatcactttgtacagatcatgtgcatccggaaaggaaagcggatggttgctcgaatcctg
ccctatctctctgttcagcatgcagctaccttgctcagagctatcgcgcataacttgccc
tttcttatcaagaaggacatccaagatgaggttctaccgtgcttagtaagaccttgtact
gttcttctgggtcacgtttcatcccaggtagtgatcagcctcttgcagcaactaactaac
ttacctcatcattctgcctgcgttactcagactgaaccagcaactcctcatcttacagct
gtgctccagaacaagtttggattaacactgttataccagatcttggctcgaggtgagcac
attctgaattctgcagcctcaacagacttactgcaggacaatcagtggacagaattggtt
tttagagtgactcgagaacttcttggaatcccctcagcatctcttgctaagccagtctgt
actccatccagtctcctatcactcttctccagatatgtcgacactcagcatctcaatgta
ctagaaacaaaactcaaattagtgcctggtacacgatag
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