Geotrypetes seraphini (Gaboon caecilian): 117348991
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Entry
117348991 CDS
T09159
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117348991 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117348991 (LIG3)
Enzymes [BR:
gsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117348991 (LIG3)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
117348991 (LIG3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
FMP23
mRNA_cap_enzyme
DUF4476
Motif
Other DBs
NCBI-GeneID:
117348991
NCBI-ProteinID:
XP_033777678
UniProt:
A0A6P8P295
LinkDB
All DBs
Position
15:64343804..64445688
Genome browser
AA seq
1008 aa
AA seq
DB search
MPAFFKVLLWQSSRPFVSKKWCLQSLGQIYRVPLYSSFSQNFRLCTEQVWGSQPVKRKYF
FTFLASRRVLSPTSHSRTRGICSASGDMAEQRYCVDYASRGMARCRKCNEKIMKGMVRIG
KIVANPFSESGGDMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDPEKDLIKQH
IKELSAKVGTTAKKKVTVQAKLSPSGQMISPSKISTATSSPSPKKRSSFTAKPGDAPSGA
SPASSLSAKMCDPSHKDCLLREFRKLCTKVSDKPSYLAKTQLIQDFLHKGTGGDAFHGDV
YLTVKLLLPGVIKNVYNLNDKQIVKLCSRIFGCSQDDMVRDLEQGDVSETVRIFFEESKS
FPPAAKSLLTIQEVDEFLTQLSKFSKEDEQQKALEEIACRCTANDLKCVIRLIKHDLKMN
SGAKHVLDALDPNAYDAFKASRNLHDVVERVLKNKKEAEMVPGLKRTLSVKATLMTPVQP
MLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNEDNFSYFSRSLKPVLPHKVAHFKD
FIPKAFPGGNSMILDSEVLLIDTSTGKPLPFGTLGVHKKAAFKDANVCLFVFDCIYFNGV
SLMDRPLLERRKFLHDNMVEIPNRILFSEMKHVTKASDLSDMISHVISEGLEGLVLKDVK
SIYEPGKRHWLKVKKDYLNEGAMADTADLAVLGAFYGQGCKGGMMSVFLMGCYDPSNQKW
CTVTKCSGGFDDATLARLQKELDVLKISKDASKIPDWLKINKNYYPDFIIQNPKKAPIWE
ITGAEFSKSEAHTADGISIRFPRCTRFREDKNWKTATNLQQLKELYQLSKQKSDFIVTAN
SSRDENGSSKNNSRQNGSASHSNNKPVAAITPDKAKKQDDPLSRKSEVQQKAEKRRAVAS
PTDHTMKKARSSDTGPSNGDSRLQSVSSPKTLLNIFTGVKLYLSPSLDDFSKIRRYFLAF
DGDLVQEFDMHSATHVMGDMTDETLDVKHVTPKWIWECIRKRRLIVSC
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcttttttcaaggtgctgctctggcagtcttcgaggccatttgtttcaaagaag
tggtgcctacagtccctgggacagatctatcgagtgccactgtacagcagcttctctcaa
aacttccgtctctgcacagaacaggtttggggaagccagcctgtaaaacgcaagtatttt
ttcacttttcttgcatcccgccgtgttctttctcctacatcccactccaggactcgaggg
atctgtagtgcctcaggagacatggcagagcaaaggtactgtgtggactatgccagccgt
ggtatggcacgctgcagaaagtgcaacgagaagattatgaaaggcatggtgcgtattgga
aagattgtggctaacccttttagcgagtctggtggagacatgaaggaatggtaccatgtg
aaatgcatctttgagaagctggagagggcacgagcaaccaccaagaagatcgaagacatt
acagacctggaaggctgggaagagttacaggatcctgaaaaggatttaataaagcagcac
attaaagagctgagtgctaaggtgggcaccacagcaaagaaaaaagttaccgtgcaggcc
aagctctctcctagtgggcagatgatctctccctccaaaatatcaacagctacatccagt
ccctctcccaagaagcgttccagtttcacagctaagcctggagatgctccctctggtgcc
tcccctgccagcagcctatctgccaagatgtgtgaccctagtcataaggactgtctgctg
cgggagttccgcaagctctgcactaaggtatctgacaagcccagctacctggccaagacg
caactcatccaggacttcttgcacaaaggaacgggaggcgatgccttccatggtgatgtg
tacttgactgtgaagctgctgttgccaggtgttatcaagaatgtttacaacctgaatgac
aagcagattgtgaagctgtgtagcaggatctttggctgcagccaggatgacatggtgcgc
gatcttgagcagggtgatgtctcagagacggtgcgtattttctttgaagaaagtaagtct
ttcccaccagcagctaagagcctgctcaccatccaggaagtagatgagttcctgactcaa
ctatcaaagttctccaaggaagatgaacagcaaaaggcattggaggaaattgcttgcagg
tgcacggcgaatgacttgaagtgcgttatccgattgataaagcatgatctaaagatgaac
tctggagctaaacatgtgttagacgctttggatccaaacgcctatgatgcttttaaagcc
tcacgaaatctacatgatgtggtggagcgagttttgaagaacaagaaggaagccgagatg
gtcccaggactgaaacgaaccctaagcgtgaaagcaaccctcatgactcctgttcagcct
atgctggctgaagcatgcaagtccattgaatatgccatgaagaagtgtcccaatggaatg
tattctgagatcaaatatgatggagagcgagttcaggtccataagaatgaagataacttc
agctatttcagccgtagcctcaagccagtgctccctcataaagtggcccattttaaagac
ttcatcccaaaggcttttccaggaggaaacagcatgatcctggactcggaagtgctgctg
attgataccagcaccgggaagcccctgccctttggcacccttggagtacataagaaagct
gcattcaaggatgccaatgtctgcctgtttgtgtttgattgtatctacttcaatggagtc
agtttgatggacaggcccttgcttgagcgaaggaaatttttgcatgataacatggtggaa
atacccaaccggattcttttctcagagatgaaacatgtgactaaagcctcggatttatca
gatatgatcagccatgtaatcagtgagggcctagaaggactggtgctgaaggatgtgaag
agtatttatgagccaggaaaacgccactggctgaaagtaaaaaaggattatctgaatgaa
ggtgcaatggctgatacggcagatcttgcagtgctgggagctttctacggacagggctgt
aaaggtggaatgatgtcggtcttcctcatgggctgttacgatcccagtaatcaaaaatgg
tgtacagtgaccaagtgttctggtggctttgatgatgccacacttgctcgcttgcagaag
gagctggatgtgttgaaaatcagcaaggatgcaagcaaaattccagactggctaaaaatt
aataagaattattatccagactttattatccagaatccaaagaaagcaccaatctgggag
attactggggctgagttctcaaaatctgaagcacacactgcagatgggatctcaatccgt
ttccctcgctgtacccgctttcgtgaagataagaactggaagacagcaaccaacctccag
cagctcaaggagctgtaccagctctccaagcaaaagtctgacttcattgtaacggccaac
tcttcccgggatgagaatggctcatcaaaaaacaacagcagacagaatgggagtgcgtcg
cacagtaacaataagccagtagcagccatcacccccgacaaagccaagaaacaagatgat
ccactttccaggaaatctgaagtgcagcagaaagcagaaaagaggagagctgtagccagt
ccaactgatcacaccatgaaaaaggcaagaagttcagacactggtcccagcaatggagac
agcagattgcaatctgtttcatcaccaaagactctattgaatatattcactggagtgaaa
ctctacttgtcgccttctctggatgacttcagcaaaatccggcgctactttcttgctttt
gatggagatctggtccaagaatttgatatgcactcagcaacacatgttatgggcgacatg
acagatgaaaccctggatgtgaagcatgtaacgccaaagtggatctgggagtgcattcgc
aaacgcaggctgattgtttcgtgttag
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