Geotrypetes seraphini (Gaboon caecilian): 117349059
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Entry
117349059 CDS
T09159
Symbol
EXOSC10
Name
(RefSeq) exosome component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117349059 (EXOSC10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117349059 (EXOSC10)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117349059 (EXOSC10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
117349059
NCBI-ProteinID:
XP_033777864
UniProt:
A0A6P8P2Q1
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Position
15:complement(27204176..27332106)
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AA seq
886 aa
AA seq
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MAALSSRAGGLQWKMERAGSEEQLLPGFKDADSFVKYSLGSVVAATKASTGLPQCGDEYD
FYRSFPGFRAFCETQGERLLHSMSRIMQYHGCRSHIKDSSKVTELEDKFDLLVDSNDVIL
ERVDILLDEASGVHRNQQPILPAGLQPPKTIVSSWNRKGGDSKKWSKSKTFQLLHAKNIV
RPQLKFREKIDNSNTPFIPKLFIKPNAQKPLPPVLADRRYRQEYPQDLDVPQALTDFIHQ
QRTQQDQQDMFVHPYKFELDHFIPPVAVLQKPQVQMYLPLQETPCYFVSSLDELVEMNEK
LCKCPEFAIDVEHHSYRSFLGLTCLMQVSTRTEDFIIDTLALRSDMYILNECFTDPNVVK
VLHGADSDIEWLQKDFGLYLVNIFDTHQAARALNLGRHSLDHLLKLYCGVESDKRYQLAD
WRIRPLPEEMMAYAQTDTHFLLYIYDKMRVALLEEGKGQNNLLQMVWQKSRDICLKKYIK
PIFTEDSYLELSRKHKKHFNTQQLAATRLLYAWRDKMARQEDESLGYVLPNHMLLKIVEE
LPKEPQGIIACCNPVPPLVRQQINELHLLIQQAREVPLFKPETPAKAKKKKRRLTSERTE
NLLFGPHDSSHTTLEGAQYVSSTACAMELKQGSLFHEGEEEVDQKAHEFPNSSYLVARAC
INLFDDPETESGEEKNLTVAQQKARRIMESFENPFRMYLSSEESNTRISQAAKFDSSTKI
YEISNRWKLQNQVQVQKNVKEKEEAKQLKHQQRVARKQAWEKLRATTDTVTTIRQQAAEE
SAKRRMTSNLRGETPKLGKKRTSKQQLEGQATQKQFTPYDYNKSDYKMFAGDIKTKQQSQ
FDPSQQTATNKKISSAKKLHPSTGNKSMSFLTEKSSRGFKHSWPKR
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcttagtagccgagcaggaggcctgcagtggaagatggagcgtgctggcagt
gaggaacagttgcttccgggcttcaaagacgcggattcattcgtgaagtactctcttgga
tcagtggttgctgctacaaaagcctccactggactccctcagtgcggtgacgaatatgat
ttctatcgcagttttcctggatttcgggccttctgtgaaacacagggcgagcgactgctg
cacagcatgagcagaattatgcagtatcacggttgtcgcagccacatcaaagatagcagc
aaagtcacagagctggaggacaaatttgatttgttggttgattctaatgatgtcattctg
gaacgagtggacattttattagatgaggcatcgggggtgcacagaaatcaacagccaatt
cttccagctggactgcagcctccaaagaccatcgtgtccagctggaaccgaaagggtgga
gattcaaaaaaatggtcaaagtcaaaaacttttcaattgcttcatgccaagaacattgta
agacctcaactcaagttccgagagaagattgacaactctaatacgccattcatcccaaag
cttttcatcaagcccaatgctcagaaaccgctgcccccagtgctggcagatagaagatac
cgacaggagtatccccaggatctagatgtcccacaagctctcactgactttattcaccag
cagaggacacagcaagaccagcaggacatgtttgttcacccatataagtttgaactagat
cactttattcctcctgtagctgttcttcagaagccccaagtccagatgtacttgcccctt
caagaaaccccctgttattttgtctcttccttggatgagctggtagaaatgaatgaaaag
ctctgcaagtgtccagaatttgccattgatgtggagcaccattcctatcgcagcttcctg
ggtctcacctgcctcatgcaagtctctacaaggacagaggacttcattattgacacattg
gctctgcgcagtgatatgtacatcctgaatgagtgtttcacagacccaaatgtggtgaag
gttttgcatggtgctgattctgacatagagtggctacagaaagactttggactatacctg
gtaaacatttttgacacacatcaggctgcccgtgccctgaacttgggtcgtcactcactg
gaccatcttctgaaattgtactgtggggtggaatctgataaacgttaccaactagctgac
tggcgaattcgcccactgccggaagaaatgatggcatatgcacagacagacactcacttc
ctgctctacatttatgataagatgcgtgtggcactgctggaagaggggaaaggacagaat
aacctgttgcagatggtgtggcagaagagcagagacatctgcctaaaaaaatacattaaa
ccaattttcactgaggactcctacctggagctaagcaggaagcataagaagcatttcaac
acacaacagctcgcagccacccgtctgctgtatgcttggagggacaagatggcacgtcaa
gaggatgaaagtttgggatatgtgctacccaaccacatgcttctgaaaatagttgaagaa
cttccaaaagaaccacaggggataattgcttgttgtaacccagttccaccacttgtgcgg
cagcaaatcaatgaacttcacctcctcatccagcaagccagagaggtaccactgtttaag
ccagaaactccagccaaggcaaagaagaaaaaacggaggctgacttcagagaggactgag
aatctgctctttggaccccatgacagctctcacaccacccttgaaggggctcagtatgtc
tcaagcacagcatgtgccatggagctgaagcaaggcagccttttccatgaaggagaagaa
gaggtagatcagaaagcacatgaatttccaaactccagctacctggttgccagagcctgt
atcaatctctttgatgatcctgaaacagaaagtggggaagaaaaaaatctcacagttgca
caacagaaggccagaagaataatggagtcttttgaaaacccttttagaatgtatctatct
tctgaagaaagcaacactcgcatctctcaggcagctaagtttgactcttcaaccaaaatc
tatgagatcagtaatcgatggaaattgcagaaccaagtacaggtgcagaagaatgtgaag
gaaaaagaagaggcaaaacagttgaaacaccaacagagagttgctcggaagcaggcctgg
gagaagcttagagctacaacagacactgtcaccacaattcgtcagcaggctgcagaggaa
tctgccaagaggcgaatgactagcaatctcaggggagaaactccaaaacttgggaagaaa
cgaaccagcaagcagcagctagaaggacaggcaacacaaaaacagtttactccctatgac
tacaacaaatctgactacaaaatgtttgctggggatattaagaccaaacagcagtcccaa
tttgatcccagtcaacaaactgccactaacaagaaaatctcatctgccaaaaaactgcac
ccttcaactgggaataaaagcatgtcatttctcactgagaaatctagcaggggttttaag
catagctggccaaagagatga
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