Geotrypetes seraphini (Gaboon caecilian): 117349239
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Entry
117349239 CDS
T09159
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03030
DNA replication
gsh03420
Nucleotide excision repair
gsh03430
Mismatch repair
gsh03440
Homologous recombination
gsh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117349239 (RPA1)
03420 Nucleotide excision repair
117349239 (RPA1)
03430 Mismatch repair
117349239 (RPA1)
03440 Homologous recombination
117349239 (RPA1)
03460 Fanconi anemia pathway
117349239 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117349239 (RPA1)
03032 DNA replication proteins [BR:
gsh03032
]
117349239 (RPA1)
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117349239 (RPA1)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117349239 (RPA1)
DNA replication proteins [BR:
gsh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117349239 (RPA1)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117349239 (RPA1)
MMR (mismatch excision repair)
117349239 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
117349239 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Por_Secre_tail
IBR
Motif
Other DBs
NCBI-GeneID:
117349239
NCBI-ProteinID:
XP_033778336
UniProt:
A0A6P8PS79
LinkDB
All DBs
Position
15:29540599..29613411
Genome browser
AA seq
617 aa
AA seq
DB search
MAVPRLSEGAIASMLLGETASKPVLQVINIRSISTGNGPPRYRLLMSDGLNTLSSFMLAT
QLNSVVEEERLKANCICQLNRSIVNTLKDGRRVIIVMDLEVLKSAEMVGGKIGNPVPFNE
AGQGQQQPPVGPAANPPISRPSQQNGPSGAAATTMVRGPSKVFGKTGGSDNILSTPGGSQ
CRVVPIASLNPYQSKWTIRARVTNKSQIRNWSNSRGEGKLFSIELVDESGEIRATGFNEQ
VDKFFSLIEVNKVYFFSKGALKIANKQYTSVKNDYEMTFTNETSVIPCEDSADVPTVQFD
FVSIGDLVIKDKDTIVDVIGVCKSFEDISKITVKSSNREVSKRNIHLMDMSGKMVTATLW
GEEAEKFDGSRQPVVAIKGARLSDFGGRSLSVLSSSNLMLNPDIPKSFELRAWFDSEGQV
LESSSISDGRGSGVSGGNTNWKTLRDVKSENLGHGDKADYFTSVATIVYFRKENCLYQAC
PSQDCNKKVIDQQNGLYRCEKCNREFPNFKYRLILSANIADFGTNQWVTCFQEVAETILG
QNSNYLGELKEKNEQAFEEVFQNANFCTYIFRIRVKLETFNDESRIKATVMEAKPVDHKE
YAQKLIMNIRQLATHLA
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggcggtaccgcggttatcggaaggtgccattgcgagtatgttgttaggagaaactgct
tcaaaacctgtcctgcaggttattaatatccgttccatttctacagggaatggcccccca
cgttaccgcttactgatgagtgatggtctgaacactctttcctctttcatgttggctacc
cagctaaactcagtagttgaagaagaacgcttgaaagccaactgcatttgtcaactgaat
cgctcaatcgtgaacacactgaaggatggaaggcgagtaatcatagtgatggacctagaa
gtcctaaaatctgctgagatggttggagggaagattggcaatcctgtaccatttaatgaa
gcagggcaagggcagcagcagccaccggtaggtccagcagctaaccctccgataagcaga
ccttcacagcagaatggaccatcaggtgctgctgcaaccactatggtccgtggtccctca
aaagtatttgggaagacaggtggtagtgacaatatcctgagcacccctggaggatcacag
tgtagggtggtgccaattgctagcctcaacccataccagtccaagtggactatccgagct
cgtgttaccaataaaagccagatccgcaactggagcaattcaagaggagaaggaaagctt
ttttccattgaactggtggatgagagtggtgaaatcagagccacgggttttaatgaacaa
gtggacaagttcttctctctcattgaagttaacaaggtatatttcttttctaaaggcgct
ttgaagattgcaaataaacagtacacatctgtgaagaatgactatgagatgacattcaca
aatgagacatcagttatcccttgtgaagactctgctgatgttcccacggtgcagtttgac
tttgtttccattggtgatctagtaatcaaggataaagacaccatagttgatgtcattggg
gtttgtaagagctttgaagatatctcaaagatcactgtgaaatccagcaatagagaagta
tctaagagaaacatacatctgatggatatgtctgggaaaatggttacagcaaccctttgg
ggtgaagaggctgaaaaatttgatggatccaggcagcctgtggtagctatcaaaggtgct
agactctcagattttggtgggcgttccttatctgtgctttcctcctctaacctgatgcta
aatccagatattccaaaatcttttgaactccgagcatggtttgactcggaggggcaagtc
ttggagtcctcatcaatctctgatgggaggggaagtggagtaagtggtggaaatactaat
tggaagactttgagagatgtgaaatcagaaaacttaggccatggagataaggcagattat
tttaccagtgtggctacgattgtgtatttccgtaaagaaaactgcttgtaccaagcttgt
ccctctcaggattgcaacaagaaagttatagaccagcagaatgggctgtaccgctgtgag
aaatgcaatcgcgagttcccaaacttcaaataccgtttgatcctgtcggccaatattgca
gattttgggacgaatcagtgggtaacctgtttccaggaggtagctgaaaccattctgggt
caaaattcaaattatcttggagagctgaaagaaaagaatgagcaggcctttgaggaagtc
ttccagaacgctaacttctgcacatatatcttccggattcgtgtcaagttagagactttc
aatgatgaatctcgtatcaaggccacagtaatggaagcgaagcctgtggatcataaggaa
tatgctcagaaactcatcatgaatattcggcagctggcaactcacttagcctga
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