KEGG T09159: 117349476

Geotrypetes seraphini (Gaboon caecilian): 117349476

Entry

117349476         CDS       T09159

Symbol

POLR2J

Name

(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a isoform X1

K03008

DNA-directed RNA polymerase II subunit RPB11

Organism

gsh Geotrypetes seraphini (Gaboon caecilian)

Pathway

gsh03020

RNA polymerase

gsh03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:gsh00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117349476 (POLR2J)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117349476 (POLR2J)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gsh03021]
    117349476 (POLR2J)
   03400 DNA repair and recombination proteins [BR:gsh03400]
    117349476 (POLR2J)
Transcription machinery [BR:gsh03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     117349476 (POLR2J)
DNA repair and recombination proteins [BR:gsh03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      117349476 (POLR2J)

SSDB

Motif

Pfam:

RNA_pol_L_2 RNA_pol_L SHNi-TPR

Other DBs

NCBI-GeneID:

117349476

NCBI-ProteinID:

XP_033778890

UniProt:

A0A6P8PCV8

LinkDB

Position

15:complement(66570717..66577494)

AA seq 129 aa
MNIHRARATWESQFGTWGCDESGLIRPFSRITITKDTKVPNACLFTINKEDHTLGNIIKS
QLLKDPQVLFAGYKVPHPLEHKIIIRLQTTPDYSPQEAFTNAITDLISELSLLEERFRVA
IKDKQEGIE

NT seq 390 nt +upstreamnt +downstreamnt
atgaatattcatcgggctcgagccacgtgggaaagccagtttgggacttggggctgtgat
gaaagtggccttatccggcccttctcaaggataacaatcacaaaagacactaaagtacca
aatgcttgcttgtttacaatcaataaggaagaccacactctgggaaatatcatcaaatca
caattactgaaggaccctcaagtcttgtttgctggttacaaagttcctcatcctttagag
cacaaaataatcattcggcttcagaccactccagactatagccctcaggaagccttcacc
aatgcaatcacagacctgatcagtgagctctccctcttggaggagaggttcagagttgct
attaaagataaacaagaaggaattgaatga

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