Geotrypetes seraphini (Gaboon caecilian): 117349558
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Entry
117349558 CDS
T09159
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117349558 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117349558 (COPA)
Membrane trafficking [BR:
gsh04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117349558 (COPA)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117349558 (COPA)
Exosomal proteins of bladder cancer cells
117349558 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
117349558
NCBI-ProteinID:
XP_033779023
UniProt:
A0A6P8PW41
LinkDB
All DBs
Position
16:42908727..42943199
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
IRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
TNLNLFAAGHDGGMIVFKLERERPAYAVHGNILYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNVENSTYDLYTIPKDTDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPSCDEIFYAGTGNLLLRDSDSVTLFDVQQK
RTLASVKISKVKYVIWSVDMSHVALLAKHAIMICNRKLESLCSIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYITRVKGNSVYCLDRECRPRILTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVVERVRILKNCGQKSLAFLTAATHGLDEEAESLKETFDP
EKELIPEIDSNAKLLQPPAPIMPLDTNWPLLTMSKGFFEGTIASKGKGNAMAADIDIDTV
GAEGWGEDAELQLDEDGFVDATEGYGDEALGKGQEEGGGWDVEEDLDLPPELDISTGPAS
GAEEGFFVPPTKGISPAQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVTTFGPFKQIFM
QAFARGRTTYQALPGLPAMYGYPNRNWKDGGMKNAVPAVGLKLSDLIQRLQLCYQLTTSG
KFEEAVEKFRLILLTVPLLVVDNKQEIAEAQQLIVICREYIVGLSMETERKKLPKETLEQ
QKRICEMAAYFTHANLQPVHMILVLRTAVNLFFKLKNFKTAASFARRLLELGPKPDVAQQ
TRKILAACEKNPVDTCQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagacgaagtctgcgcgcgtgaaaggcctaagctttcaccccaaa
cggccctggatattgaccagcttgcacaatggtgtgatccagctctgggactaccgcatg
tgcactttgattgacaagtttgatgagcatgatggacctgtgcgagggatcgatttccac
aagcagcaaccactgtttgtttctggaggagatgactacaaaatcaaggtttggaactac
aagctacgtcgctgtctctttactcttcttggacacctggattacattcgcaccaccttc
tttcaccatgaatatccttggatcctgagtgcttctgatgatcagactatacgaatttgg
aactggcagtcaaggacctgtgtctgtgtactgacaggccataaccactatgtgatgtgt
gcccagtttcatccttctgaagacttggtggtgtcagccagcctggaccagactgttcgc
gtttgggatatttctggcctgaggaagaagaacctgtctcctggagccgtggagtcagac
atccggggaataaccggggtggatctatttgggaccacagatgcagtggtgaagcacgtg
ctcgagggacatgaccgtggtgtgaactgggccgcctttcatcccacaatgcctctaatt
gtgtctggggcagacgacaggcaagtcaagatctggaggatgaacgaatcaaaagcctgg
gaggtggacacttgtcgaggtcactataacaatgtctcgtgtgccgtgttccacccccgc
caggagctgatcctcagcaactctgaggataagagcatccgtgtatgggacatgtctaag
cgaactggggtgcagaccttccgcagggaccatgatcgtttctgggtactcgctgcccac
accaacctcaacctcttcgctgcaggtcatgatgggggtatgattgtctttaagctggag
cgtgaacgccctgcctatgccgtccatggcaacatactctactatgttaaagaccgcttc
ctgcgacaactggacttcaacagctccaaagatgtagccgtcatgcagctgagaagtggt
tccaagttcccagtgttcaacatgtcatacaaccctgctgagaatgctgtcctgctctgt
acaagggccagtaatgtggaaaacagcacttatgacctttacaccattcccaaggacaca
gactcccagaatccagatgctcctgaagggaagcgttcctcgggtctgactgcagtgtgg
gtggctcggaatcgtttcgctgtcctggaccgcatgcattctatcctgatcaaaaacctg
aagaatgagatcaccaagaaggttcaggtaccaagctgtgatgagattttctatgctggt
actgggaaccttctgctcagggactcggactccgtcaccctctttgatgttcagcagaaa
cgcacactcgcatctgtgaagatctccaaagtgaagtacgtgatttggtcagtggacatg
tcgcacgtggccctgttggctaaacacgccatcatgatctgtaacagaaagctggagtcg
ctctgcagcattcatgagaacattcgggtcaagagcggagcctgggacgagagcggcgtt
ttcatctataccaccagcaaccacattaaatatgccctgacctctggggatcacggcatc
attcgaaccctggacctgcctatctacatcactcgagtgaaagggaatagtgtctactgt
ctggatcgagagtgccgcccaaggatccttaccatcgaccccacagaattcaaattcaaa
ctggcactgatcaacaggaaatacgatgaggtcttgcacatggtgagaaatgcaaaactg
gtgggccagtccattattgcatacctgcagaagaaaggctaccctgaagtggcactgcac
tttgtaaaggatgagaagaccaggtttagcctggcactggaatgtggcaacattgagatc
gccctggaagccgcgaaggctctagatgataaaaactgctgggaaaagctgggcgaagtg
gccctgcttcaggggaaccatcagattgtggagatgtgctaccagcgcaccaagaacttt
gacaagctctctttcctctacctcatcaccggtaacctggagaaactgcgtaagatgatg
aagatagctgagattcgtaaggatatgagtggccactaccagaatgcactctacttgggg
gatgtggtcgagagagttcggatcctgaagaactgtgggcagaagtccctggcctttctc
acagctgccactcatggtttagatgaggaagcagagagtctgaaggagacttttgaccca
gaaaaggaattgattcccgagattgactccaatgcaaaactgctgcagccccctgccccc
atcatgcccctggacaccaactggccactgttaaccatgtccaagggcttctttgaagga
accattgccagcaagggtaaaggcaatgcaatggctgccgatatcgatattgatacagtt
ggtgccgaaggctggggagaagatgctgaacttcagcttgatgaagatggatttgtggac
gcgacagaaggatatggtgatgaggcccttgggaaaggacaggaagaaggaggtggctgg
gatgtggaggaagacctggatcttccaccagaactggacatctccactggccctgcttct
ggtgcagaggaaggattctttgtgccacccactaagggaatcagccctgctcagatctgg
tgtaataattctcagttacctgttgatcacatccttgctggctcctttgagactgccatg
aggctcctccatgaccaagtgggagtgacaacctttggtccctttaagcagattttcatg
caggcctttgcccgagggcgcaccacttaccaggcactgcctggtctccctgccatgtat
ggatatcccaatcgcaactggaaggatggcgggatgaagaatgcagtaccagctgtgggc
ctgaaactgagtgacctgatccagcgcctgcagctctgctatcagttgaccacctctggc
aagtttgaggaagcggtggagaagttccggctgatcctgctgactgtgccactgctggtg
gtggataacaagcaggagattgcagaggctcagcagctcattgtgatctgcagggaatac
attgttggactttccatggaaactgaacgaaagaagcttcccaaagagactctggagcag
cagaaacgcatctgtgagatggcagcgtacttcactcacgccaacctgcaacctgtgcat
atgatcttggtactccgcaccgctgtcaacctcttcttcaagctcaagaacttcaagacc
gctgcctcctttgccagacgcctcctggagcttggacccaagccagatgtggctcagcag
acccggaaaatcctggctgcctgtgaaaagaacccagtggacacctgccagctgaactat
gacatgcataacccctttgatatctgtgctgcctcctaccgccccatctatcgtgggaag
cctgtggagaagtgtcccctgagtggagcctgctatagtcccgaattcaagggtcagatc
tgcagggtcacaacggtgacggagatcggaaaggatgtcattggactgaggatcagccca
cttcagtttcgttaa
DBGET
integrated database retrieval system
