Geotrypetes seraphini (Gaboon caecilian): 117349987
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Entry
117349987 CDS
T09159
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gsh01009
]
117349987 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117349987 (HDAC6)
04131 Membrane trafficking [BR:
gsh04131
]
117349987 (HDAC6)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117349987 (HDAC6)
Enzymes [BR:
gsh01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117349987 (HDAC6)
Protein phosphatases and associated proteins [BR:
gsh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117349987 (HDAC6)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117349987 (HDAC6)
Membrane trafficking [BR:
gsh04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117349987 (HDAC6)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
117349987 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
117349987
NCBI-ProteinID:
XP_033779718
UniProt:
A0A6P8NTP1
LinkDB
All DBs
Position
1:465398764..465554666
Genome browser
AA seq
1272 aa
AA seq
DB search
MASPQDHMERRNLRSSSRSPSFPAESAATNTTTASIVMVISIPCEEKQKGRKGVQQQQSL
QEAKKKGRMKLNKSVEEDMVSQLKGLNLSSKVTLGATALVCDESLEDFYCLWDKNFLESP
DRLAAVREKLTHYGLLERCVLVQAHAASDEEILLVHSQKYLELMKSTQTMEQVELKALAD
TYDSVFLHPNSFSCACLAAGSVLQLVDKVLTGEALNGLALVRPPGHHAHRDKMNGYCMFN
HLGIAARYAQRKHATERVLIVDWDVHHGQGTQFIFEEDPSVLYFSIHRHQHSRFWPHLLE
SGSNAVGRGQGEGFNINVPWNQIGMQDADYISTFLHLLLPVAFKFEPNLVLVAAGFDSVV
GDPKGEMAVSPACFAHLTHLLMGLAGGKLVLSLEGGYNMRSLAEGVCAALKILLGDPCPR
LASPIAPCQSALESMSETIGAHGKYWESLWDFGLGDLSPEKEEEKEEEEQADRGMLSPEA
LDALLDSTMIEVMRPLPKERTGLVYDERMKEHFNMWDSYHPEVPQRISRIYQLHMDLGLV
SRCCRLPSRCATIDELLMCHSLDYIKTLQSTTDMKPRDLHRKGNEYNSIYLNSKSYACAL
LAAGCTFSAVEAVVTRKVRNAIAIVRPPGHHAERSNACGFCFFNSVALAARFAQELIGQP
IRILILDWDIHHGNGTQHMFESDPSVLYVSLHRYDHGTFFPNSEDANYDKVGYGEGQGFN
VNVAWNGSRMGDPEYLAAFQRLVMPLAYEFNPELVVVSAGFDAARGDPLGGCLVTPEGYA
HMTHLLLGLAGGRVVLVLEGGYNLTSISESMSMCTRTLLGEAPPVLAKLKSPQPSALQSI
SNTIHAHLKYWKSLRLNVPKALGEEEPAVTRSVSDSTIKNQSPFLKLDRQKERIKSSPEG
EKVDGRTQLSPPYSSVSGKGDSRGQTSLEQPAAAGKDDKKGQKLLASPEKVQERSQRSPV
PAVAPENVDRGIPVEETREHQTPSDKNLQYCGELTAGLRSQQSPATPGSPSEGVKDDKEQ
LSTEVIGKNEEERDVQPAQQICTSLESLHLRRDSPGTLANLADSTSAHQNICSTPVGGAR
KKVRPHTTSGSLPSSPSLITVEYVSEKEGIDGTREMKEQTPQVGDLKEEEQLEGASGWSG
SGSLGTLAQLFKNNLEAGSGTLYAVTPLPWCPHLESVQPVPFSGLNVMEACRECGSEAEN
WVCLVCYEVYCGRYVNEHMLTHSLNSGHLIVLSYSDLSVWCYGCDSYVHHQIILEAINVA
HRMKFNEDLPLL
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaccccaggatcatatggaacgccggaacctccgctcatcttctcgatctcct
tctttcccagctgagagtgctgccaccaacaccaccactgcatcgattgtaatggtgatt
tccattccctgcgaggagaagcagaaagggcgaaagggagttcagcagcagcagtccctg
caggaggcaaagaaaaagggcaggatgaagttaaacaagagcgtggaggaagacatggtc
tcacagctgaaaggcctgaacctgagctcaaaagtcactcttggagctacagctctggtg
tgtgatgagagtctggaggatttctattgtctctgggacaagaatttcctggaatctcca
gatcgacttgctgcagtgagggagaagctgactcattatgggctactagaacgatgtgtt
ctcgtacaggctcatgcagcatctgatgaggaaattctgctggtacacagccagaaatat
ctggagctgatgaaatccactcagaccatggaacaggtggagctaaaggcactggcagac
acctatgactctgtcttccttcacccgaattcctttagctgtgcctgcctggctgctggc
tcagtccttcaactggtggataaagtactgactggggaggctctcaatggtctggcactg
gtgaggcctccaggtcaccatgcgcatcgggataaaatgaacggttactgcatgtttaat
catctaggcattgctgctcgttatgctcagcgcaagcatgccactgaacgggtgctaatt
gtggactgggatgtccaccatgggcagggcacacagttcatttttgaagaggaccctagc
gtcctttatttttccatccaccgacaccagcacagcagattctggcctcacctgttggag
tcgggaagcaacgctgtaggccggggacagggagaggggttcaatattaatgtgccttgg
aaccagattggcatgcaagatgcagattacatctccaccttcttgcatctgcttctgcct
gtggccttcaagtttgagcccaacctggtgttggtagcagctgggtttgactctgtggtg
ggagaccccaagggtgagatggcagtatccccagcatgctttgctcatctgacacatctg
ctgatgggactggcaggagggaagctggttctctcattagagggtggttacaacatgcgc
tcactggcggaaggggtatgtgcagcattgaagattctgctgggagacccatgcccaagg
cttgcctctcctatagcaccgtgtcagagtgccctggaatccatgtctgagacaattggt
gctcacggtaaatactgggagagtctgtgggactttggcttaggggacctgtcaccagag
aaggaggaggagaaggaggaggaggagcaggcagacagagggatgctgagccctgaggca
cttgatgctcttttagattcaacaatgatagaagttatgagaccattgcccaaggaacgc
acaggacttgtctatgatgagaggatgaaggagcactttaacatgtgggacagttatcat
cctgaggttccccagcgcatatccaggatttaccagctgcacatggatcttggtttagtg
agtcgctgttgccggttgccctcgcgctgtgccaccattgatgaattactgatgtgccac
agtctggactacatcaagacccttcaatcaactacagacatgaaaccaagggatctgcat
cggaagggaaatgaatataactcaatttacctcaactccaaatcctatgcctgtgccctt
ctagctgcaggctgtaccttctctgctgtggaagcagtagttacaagaaaggtgaggaat
gccatagcaattgtacgtcccccaggacaccatgctgagaggagtaatgcctgtggattc
tgcttctttaattcagtggctctggcagctcgctttgcacaggaattaataggccagcca
atcaggatactgattctggattgggacattcaccatggcaatggcacacagcacatgttt
gagagcgaccccagtgtactatacgtctccctgcatcggtatgaccatggcactttcttc
ccaaactcagaggatgccaattatgataaggttgggtatggtgaaggacagggctttaat
gtgaacgtggcatggaatggcagtagaatgggtgaccccgaatatctggcagcatttcag
cgactggtcatgcccctggcatatgagtttaacccagaactagttgtggtgtcggctggt
tttgatgcagcccggggcgacccgctgggtggatgtctggtgactcctgaaggctatgct
cacatgacccaccttctactaggattggcaggtggtcgtgttgtcttagtgcttgagggt
ggttataacctgacctctatctctgagtcaatgtctatgtgcacacgcaccctgctggga
gaggcccctccagtactggcaaagctgaaatctccccaacccagtgcactacagtccatt
agcaacacgatccatgcacacctcaagtactggaaaagcttacggcttaatgtccctaaa
gcccttggtgaagaagaaccagcagtaaccagaagcgtctcagatagtaccatcaaaaat
cagtcaccctttcttaaactggacaggcagaaagaaaggattaagagttcaccagaaggt
gagaaggtggatgggagaactcaactgtcaccaccatattcatctgtctctgggaaagga
gatagcagaggtcagacatcactggaacagccagcagctgctgggaaagatgataagaaa
ggacagaagttgcttgcctcccctgagaaggttcaagaaagaagccagaggtcaccagtg
ccagcagtggcccctgagaatgttgacagagggataccggtggaggagacaagggaacac
caaactccgtctgacaagaacttacaatattgtggtgaactgactgcaggcctgaggagt
cagcagtctccagctacccctggaagtcccagtgaaggagtaaaggatgacaaagagcag
ctgtcaacagaggttatagggaagaatgaggaggagagggatgtgcagcctgctcagcag
atctgcacctctctggaatccctgcacctgaggcgagactctcctgggactctagcaaac
ctcgctgactccacctctgctcatcagaacatttgctctacaccagtgggtggggcaagg
aagaaagttcggccccatacaacatctggatccttaccatcttctccttccttaattaca
gtagagtatgtatcagaaaaagagggcattgatgggaccagagagatgaaggagcagact
ccacaagttggtgatttgaaggaggaggaacaattggagggagctagtggctggagtggc
tctggaagcttagggaccttggctcaactgttcaagaacaatctggaagcaggttcggga
acgttgtatgcggtgacaccactgccctggtgccctcatctggagtcagtgcaaccagtt
cccttttctggcttgaatgtgatggaggcttgcagggagtgtggtagtgaggcagagaac
tgggtctgtctcgtgtgctatgaggtatactgtggccgctatgtgaatgagcacatgctg
acccatagcctgaattctggacacctcattgtgttgagctactctgacctctctgtctgg
tgctacggctgtgactcttatgtccaccaccagatcattttggaagccataaatgtggcc
caccgaatgaagttcaatgaagatctacccttgctgtaa
DBGET
integrated database retrieval system
