Geotrypetes seraphini (Gaboon caecilian): 117350003
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Entry
117350003 CDS
T09159
Symbol
SMG5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117350003 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117350003 (SMG5)
03032 DNA replication proteins [BR:
gsh03032
]
117350003 (SMG5)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
117350003 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
117350003 (SMG5)
DNA replication proteins [BR:
gsh03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
117350003 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
117350003
NCBI-ProteinID:
XP_033779748
UniProt:
A0A6P8PY92
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All DBs
Position
16:40597221..40634674
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AA seq
1051 aa
AA seq
DB search
MSQGAADGEPEAKVLHTKRLYRAVVEAVHRVDLILSNKTAYQEVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKANKKHIHSRSTLECAYRTHLVAGIGFYQ
HLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVLASAKEMDWAQMACHRCLVYLGDLAR
YQNELAGVDTEQLAERFYYQALSVAPHIGMPFNQLGTLAGSRYYHVEATYCYLRCIQSEQ
SFDGAYGNLKRLFDKAVKTYQQLKKCEARKLSVSKKRCKDVKKLLVAFMYLQSLFQPNSS
CVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYENGYSYLPDRLIFRMVVICL
MSMDNLKKAGSKHYSAAIAFTLALFSHLINHVNIRLQAELEEGQSPVPAFQTDSPDDLEV
KENSQTLEREQEVGSVAVLNQVGKEVKPGRGNCKKSQKYSRLSLLRRRRHPRQTDESDLS
EGFDSDSSRDSPKGSENSGSGSDKSDEEQAAFDAETDSDMNSQESRSDLEDIEGEPSGEE
EEEEDEEGGTKQARGSQEALKNSGEGPDSKLSSTSKTENQDPSANGPGLGSSEASIASNL
QAMSTQMFQSKRCFRLAPTFSNVLLRPSSELTVSNQAESKPCVNGDVEKPSLAHQDGSDS
EESVDSAKSCPNERSLQEKLEIMTNEGLLPAVKVFLDWLRTNTDIIIMCAQSSQSLWNRL
SVLLNLLPTAGKLQEAGIPLCSEAQELLTRCELPDLSTNLLLPEDVALRNLPPLRSAHKK
YNFEQERPTLGPLEEAVVRHCYIRSFGHFLTRLQGGGVLQFNAEVGIFISTTQSEQDDLL
LQARAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLIPDTQALC
QHLTIIRQLASSGRFIIIIPRTVIDGLDFLKKENAGARDGIRYLEAEFKKGNRYIRCQKD
TGKSFERHKLKRQDLDAWHLYKILDSCKQLTVSQGSGEDDTAGMVTVITGVQLDNPSTLS
AAMQSALQAAASTSVEIKHILEFYKQWKEIG
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggggcggccgacggagagcccgaggccaaggtcctgcataccaagaggctc
taccgggctgtcgtggaggcagtgcacagggtggatctcatcctctctaacaagacagct
taccaagaggtgttcaaacctgagaacatcagcctgaggaacaagctgcgtgagctgtgt
gtgaagcttatgttcttgcaccccgtggattatggcaggaaagcagaggagctgttgtgg
agaaaagtgtactatgaagtcatccagctcatcaaagccaataagaaacatatccacagc
cgaagtaccctggaatgtgcctacaggacccacctggtggctggcatcggcttttaccag
caccttctgctatacatccagtcccattaccagctggagctgcagtgttgtattgactgg
actcatgtgactgacccattgataggatgcaagaagcctgtgctggcctcggcgaaagag
atggattgggcacagatggcctgtcaccggtgtctggtttatctcggtgatttggctcgc
tatcagaatgagttagccggtgtggacacagagcagctggccgagaggttctactatcaa
gcactttccgttgcaccccacattgggatgccctttaaccagctgggaaccttggcagga
agtagatattatcatgtggaagccacttactgttacctgcgctgcatccagtcggaacag
tccttcgatggtgcgtacgggaacctgaagaggctttttgacaaggcggtgaaaacgtac
cagcagcttaagaaatgcgaagccagaaagctgtctgtcagcaagaagaggtgcaaagac
gtcaaaaagctcttggtggcctttatgtaccttcagagccttttccagcctaacagcagc
tgtgtggactcggagctgacctctctctgccagtcggtgttggaggacttcaatctttgc
cttttctacttgccctcatcccccaacctgagcctggccagtgaggatgaggaggaatac
gagaatggctactcctacctccccgatcgcctcatcttcaggatggtggtcatttgccta
atgagcatggataacctgaagaaggcaggttccaagcactatagcgccgccattgcattc
acgctggcgctgttctcccacttgataaaccacgtcaacatccggctgcaggctgagctg
gaggaaggccagagtcctgtcccagcgttccagactgacagccccgatgacctggaggtg
aaagagaattcacagacgttggagagggagcaggaggtgggcagcgtcgccgtgctcaac
caggttggcaaagaggtgaagccaggccgtggcaactgcaagaagagccagaagtactcg
cgcctttcgctcctgcggcgccgcaggcatccgcggcagacggatgaaagcgacctgagc
gagggttttgactcggactcgagccgggattccccgaagggcagcgagaactcgggcagt
ggctcggataagagcgacgaggagcaggcggcttttgacgccgagacggattcggatatg
aacagccaagagtcgcgctcggacctggaggacatagagggtgagcctagtggtgaggag
gaagaggaggaagatgaggaggggggcaccaaacaagccagaggatctcaagaggccctt
aagaactctggggaggggccagattccaaactctcaagcacttccaaaacggagaaccaa
gatccatctgccaatggaccgggcctgggctccagtgaggctagtatagccagcaaccta
caggccatgtcgacccagatgtttcaaagcaaacgctgctttcgcttggcccccaccttc
agcaatgtcctcttgaggccgagcagcgagctgaccgtctccaatcaggcagagagcaag
ccgtgcgtgaacggagatgtggagaaacccagcctggcacatcaagatgggtcagactcg
gaggaaagcgtagacagcgccaagtcctgtcccaacgagagaagcctccaggagaagttg
gagatcatgaccaatgagggtctgctgcctgccgtgaaggtcttcctggattggctgcgg
acgaacacagacatcattattatgtgtgcgcagagctcccagagcctgtggaaccgtctt
tctgtgctgctgaatcttctgcccaccgcaggcaagctgcaggaagcaggtatccctttg
tgctctgaggcccaagagttgctgacaaggtgtgagcttccagatctgagcacgaatttg
ctgctgcctgaagacgtggccctgcgcaacctccccccgctgagaagtgcgcataaaaag
tacaactttgagcaggagaggcccacgctcggtcctctagaggaggccgttgtccgtcac
tgttacatccggagtttcggccacttcctgactcgcctgcagggcggcggcgtcctgcag
ttcaacgcggaggtggggatcttcatcagcacaacccagtctgagcaggatgacctgctg
ctccaagctcgggctcagttccgcatggctgaggaagaggcacgaaggaaccggctgatg
agggacatggcccagttacgactgcagctggaagtctcgcagctggaagggagtctccag
cagccgaaggcacagtctgccatgtctccctatctcatccctgacacccaggcgctctgt
cagcacctgacaatcattaggcagctggccagcagtggcagatttatcataattatccct
cgcacagtgattgacggcttggattttctgaaaaaagagaatgcaggggcaagagatggg
atcagatacctggaggctgagtttaaaaaggggaaccggtatatccgttgccagaaggat
accgggaaaagttttgagcgacacaagctgaaacgtcaggacttggatgcctggcatctc
tacaagattttggatagctgcaaacagctgactgtgtctcagggaagtggagaggatgac
actgctggcatggtgactgtcataactggtgtccagctggacaatcccagcaccctctct
gcagctatgcagtctgctctccaggccgcagccagcaccagtgtggaaatcaaacacatc
ctagaattctacaaacagtggaaagaaataggctga
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integrated database retrieval system
