Geotrypetes seraphini (Gaboon caecilian): 117350649
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Entry
117350649 CDS
T09159
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117350649 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117350649 (SMARCA4)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117350649 (SMARCA4)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117350649 (SMARCA4)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117350649 (SMARCA4)
Chromatin remodeling factors
BAF complex
117350649 (SMARCA4)
PBAF complex
117350649 (SMARCA4)
GBAF(ncBAF) complex
117350649 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
117350649
NCBI-ProteinID:
XP_033780974
UniProt:
A0A6P8PB26
LinkDB
All DBs
Position
16:49903158..49952854
Genome browser
AA seq
1604 aa
AA seq
DB search
MSTPDPPLGGTPRPGTSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHAIPPQG
PSGYPQDNMHQMHKPLDSLHEKGISDDPRYGQMKGMALRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHASSPIPANGPSSGPPISSGPDSTDPLALGQQSRSPTPFNQSQLHQLRAQIM
AYKMLARGQPLPDHLQLAVQGKRPMPGMQQQLPALPPPTVSGTGQGQGSTPAQGPGPTPP
NYNRPHGMGGPTMPPPGPSGVPPGMPGQPSGAPPKPWPEGPIVNAAAPTSTPQKLIPPQP
TGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPPPMVQLHQKQNRITPIQKPRGLDPVEIL
QEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRD
TALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFK
EYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKD
KRLAYLLQQTDEYVANLTELVRQHKAAQVLKEKKKKKKKKKQENVEGQPPALGPDGEPLD
ETSQMSDLPVKVIHVDSGKILTGAEAPKAGQLETWLEMNPGYEVAPRSDSEESGTEEEEE
EEEEEQPPNSSSSLPTEEKKKIPDPDSDEVSDIYARHIIEHAKQDVDDEYGVSQAAARGL
QSYYAVAHAVSERVDKQSTLLVNGFLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ
TIALITYLMEHKRINGPFLIIVPLSTLSNWVYEFDKWGPSVVKVSYKGSPAARRAFVPQL
RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLL
LTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRL
HKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKG
KGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRI
LPKLRATNHKVLLFCQMTALMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEVGSE
YFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVN
SVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDET
VNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLIEEDELPSWIIKDDAEVERLTCEE
EEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDFDPSC
STPTTSTRSRDKDEDKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKESSSGRQLS
EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE
GSLIYEDSIVLQSVFTSVRQKIEKEEESDGEESEEEEELEEEGSESESRSVKVKIKLSRK
EKGAERLKGRRRTSRGSRAKPVVSDDDSEEEHEEERSGSGSEED
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaccagaccctcccctgggtgggacaccccgcccgggaacatctcctggacca
ggcccttctcctggtgctatgctggggcccagtcctggtccctcacctggttctgcacat
agtatgatgggtcccagccctggacctccttcagctggtcacgccatacccccccagggg
cctagtggctaccctcaggacaatatgcatcagatgcacaagcctttggactccttgcat
gagaagggaatatctgatgaccctcgctatggtcagatgaaaggcatggctctgcgtcca
ggtgggcatagtggcatgggaccacctccaagccctatggatcagcactcacaaggttac
ccttctcctcttggtggctcagagcatgcatcgagtcccattccggccaatggtccatcc
tctggtccgcctatatcttctggccctgacagcactgaccccctagccctggggcagcag
agccgcagtcccaccccattcaaccagagccagctgcaccagttacgagcacaaatcatg
gcctacaagatgcttgccagaggacagccactgccagaccacctgcagttggccgtgcag
ggaaagcgtccgatgcctggaatgcaacagcagttgccagcactacctccacccacggtg
tctggaaccgggcaagggcaaggttctacacctgcacaaggaccgggaccaacacctcca
aactacaacagacctcatggtatgggagggcctaccatgccccctccaggaccctctgga
gtccctccaggaatgcccgggcagccttccggtgctcctccaaaaccttggcccgaagga
ccaattgtgaatgcggcagctccgacgagtacaccccagaaactcattccccctcagcct
actggtcgcccttcacctgcaccacccgcagtgcctcctgcagcttctcccgtcatgcca
ccccagacacagtccccagggcagccagcccagcccccacccatggtacagcttcaccag
aagcagaaccggattacgcctatccagaagccacggggcctggaccctgtagagatcctg
caagagagagaatacagactgcaggctcgtattgcccatcgaatccaggagctggagaac
ttgcctgggtcacttgctggtgacctaagaaccaaagctaccattgaattgaaggccctg
agacttctgaacttccagagacagttgcgtcaggaagtagtggtgtgcatgagaagggac
acagcgctggagacggcactgaatgccaaggcttacaagcgcagcaagaggcaatccctg
cgggaggcccgcatcactgagaaactagagaaacagcagaagattgagcaggagcgcaaa
cgccggcaaaagcaccaagaatacctcaacagcatccttcagcatgccaaggatttcaag
gaataccacagatcagtgacaggcaaaatccagaagctcaccaaagcagtggccacgtac
catgccaacacagagcgggagcaaaagaaggagaatgagcggatagaaaaggagaggatg
cgtagattgatggctgaagatgaagaaggttaccggaaactgattgatcagaagaaggac
aagcgtctggcctatctcctccagcagacggacgagtacgtggccaatctgactgaactg
gtgcgacagcacaaggcagcgcaggtgctgaaggagaagaagaagaaaaagaaaaagaag
aagcaggagaatgtggaaggacagcccccagcattgggaccagatggggaacccctggac
gagaccagccagatgagcgatctcccggtgaaagtgattcacgtagacagtgggaagatt
ctgactggtgcagaagctcccaaggctggccagctagagacctggctggagatgaatcca
gggtatgaggtagcaccaagatctgacagcgaagaaagcggcacggaggaggaggaagag
gaggaagaggaggaacaaccccccaactcttcgtcttccctgcctacagaagagaagaaa
aagatccccgacccagacagcgacgaggtgtcggatatatacgccagacacatcattgag
catgccaagcaggacgtggatgatgagtacggagtctcccaagctgccgcccggggccta
cagtcatattatgccgtggcacatgctgtcagtgaaagggtggacaagcagtccacgctg
ctggtgaatggtttcctcaagcagtaccagattaaagggctggaatggctggtctccctc
tataataataacttgaacgggatcctagcagacgaaatggggctggggaaaaccatccag
accattgcattaattacatacctcatggaacacaaacgtatcaacggtcccttcctcatc
atagtacctctctcaacactttcaaattgggtttacgaatttgacaagtggggcccttca
gtagtgaaagtctcctacaaggggtctcctgctgcacgaagagcttttgtacctcagctt
agaagtggaaagtttaacgttctgctcactacttatgaatatattattaaagataagcac
atacttgctaagatccgttggaagtacatgattgtagatgaaggccaccggatgaagaac
caccactgtaagcttacccaggtcctgaacactcactacgtggcacccaggcgtctgctg
ctaacggggaccccactacagaacaagctgccagagctctgggcgctgctcaacttcctg
ctgcccaccatcttcaagagctgcagcacgtttgagcagtggttcaatgccccgtttgcc
atgactggagagaaggtggatttgaatgaagaagaaacaatcttaatcattcggcgcctt
cacaaagtgctgcggccctttctgctgagaaggctgaagaaagaggtggaggcccagctg
ccagaaaaggtggaatacgtcattaaatgtgacatgtctgcgttgcagagagtgctgtat
cgacacatgcaggccaagggtgttctgcttaccgacgggtcagagaaggacaaaaagggc
aaaggtgggactaaaactctgatgaacaccatcatgcagttgaggaagatctgtaaccat
ccgtacatgttccagcagattgaggaatccttctcggagcatttaggattcacaggtgga
attgtgcagggactagacttgtaccgagcctccggcaaatttgagctcctcgatcgaatt
cttccaaagttacgtgcaaccaaccacaaggtgcttcttttctgccaaatgacggcactc
atgacgatcatggaggattattttgcttatcgtggtttcaaatacctccggctcgatggt
accacaaaagcagaagatcgtggcatgctgctgaaaacgttcaacgaggtgggatcggag
tactttatctttctgctgagcacccgagctggggggctgggcttaaatctccagtctgcc
gacactgtcatcatttttgacagcgattggaacccacatcaggacctgcaggcccaagat
cgggctcatcgcattggccagcagaatgaggtgcgcgtgctgcgactctgcactgtgaac
agcgtggaggaaaagatccttgccgctgccaaatacaagctgaacgtggatcagaaggtc
atccaggctggcatgtttgaccagaaatcctccagccacgagagacgagcattcctacag
gccatcctggagcatgaagagcaggacgaggaagaagatgaagttccagatgatgagaca
gtaaatcagatgattgccagacacgaggaggagtttgatctctttatgcgcatggatctg
gaccgcaggcgtgaggaagctcggaatcctaagcgtaagccacggctgatcgaagaggat
gaattaccctcctggattatcaaggatgacgcggaggtggagaggctgacgtgtgaggaa
gaggaagagaagatgtttggccgtggctctcggcaccgcaaggaagtggactacagtgac
tcactgaccgagaaacagtggctgaaggccatcgaggagggcacgctggaagagattgag
gaggaggtacggcagaaaaagtcttcccggaagcgcaagcgagactttgaccccagctgc
tccaccccgaccaccagcacccgcagccgtgacaaggatgaggacaaaaaacagaagaaa
cgtggccgtcctcctgccgagaaactgtcccctaacccgcccaacctcaccaagaagatg
aaaaagatagtcgatgctgtgatcaaatataaagagagcagcagcgggcggcagctcagt
gaagtcttcatccagctgccgtctcggaaggaactgccagaatattatgagctgatccgt
aagcctgtggacttcaaaaagatcaaggagcggattcgcaatcacaagtatcggagcctc
aatgacctggagaaggatgtcatgctgctctgtcagaatgcccagacttttaacctagag
ggctcgctgatctacgaagactccatagtgcttcaatccgtcttcaccagcgtacggcag
aagattgaaaaggaggaggaaagtgatggggaggagagcgaggaagaggaggagctggaa
gaggaaggttctgagtcagaatctcgctctgtgaaagtgaagatcaagctgagcaggaag
gagaagggagcggagcgtttgaaggggcgcaggcgcaccagtcgagggtcccgagccaag
ccagtggtcagtgacgatgacagtgaggaagagcatgaggaggagcgctcaggaagcggc
agtgaggaggactga
DBGET
integrated database retrieval system
