Geotrypetes seraphini (Gaboon caecilian): 117350710
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Entry
117350710 CDS
T09159
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117350710 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117350710 (SMARCA2)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117350710 (SMARCA2)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117350710 (SMARCA2)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117350710 (SMARCA2)
Chromatin remodeling factors
BAF complex
117350710 (SMARCA2)
PBAF complex
117350710 (SMARCA2)
GBAF(ncBAF) complex
117350710 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Bromodomain
SnAC
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
117350710
NCBI-ProteinID:
XP_033781117
UniProt:
A0A6P8NXB3
LinkDB
All DBs
Position
1:477294889..477899077
Genome browser
AA seq
1580 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVTHPMATL
AHSDYPQEGMHQMHKSLDGMHEKGIADEIHCASVKSTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPDHVSSPMSTGGPTPPQIPPSQPGPLMPGDPQVMSQPTRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPENLQLAVQGKRTLPGIQQQQQQQQQQQQQQQQQQQIIPATY
NRPPGMGMHPMGVPPAGPGPTPGMPGHGTNMTPKTWTEGQGSEMSVPSTPQKLAVPAPSG
RPSPAPPAVQPPVAMPGPSVTQPTPGQPTSIVQLQQKQNRISPIQKPQGLDPIEILQERE
YRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLE
TALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR
SVTGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLA
YLLQQTDEYVANLTSLVWEHKQAQAAKEKKKRRRRKKKAEENAEGMGSGLGPDGELIDES
SQMSDLPVKVIHTETGKVLLAPEAPKASQLETWLEMNPGYEVAPRSDSEESGSEYEEEDE
DDESSRLESEEKIRINLNTDDVTENDAKQIIETAKQDVDDEYSMQADARESQSYYAVAHA
ITERVEKQSSLLINGSLKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM
EHKRLNGPYLIIVPLSTLSNWQYEFDKWAPSVVKIAYKGTPAMRRSLVPQLRSGKFNVLL
TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK
LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLL
RRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMN
TIMQLRKICNHPYMFQHIEESFAEHLGYSGGVINGADLYRASGKFELLDRILPKLRATNH
RVLLFCQMTSLMTIMEDYFAFRNLLYLRLDGTTKSEDRAALLKKFNEEGSQYFIFLLSTR
AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA
AKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNESQKKDELSGDNSQEGASQE
EDEVPDDETLNQMIARNEEEFDLFMRMDMDRRREDARNPKRRPRLLEEDDLPSWIIKDDA
EVERLTCEDEEEKIFGRGSRQRRDVDYSDTLTEKQWLRAIEDGNLEEMEEEVRLKKRKRR
RNVDKDSSKDDGDKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVF
VQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSVGDLEKDVMLLCHNAQTFNLEGSQ
IYEDSIVLQSVFKSARQKIAKEEESEEESNDDEEEEEDESESESKSVKVKIRLNKKDEKS
RDKGKGKKRQSRVKAKPCCE
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaccaacagaccctggtgcaatgccgcaccctgggccttccccagggccaggc
ccttctcctggacctattctaggacctagccctggaccaggaccttcaccaggttcagta
cacagcatgatggggccaagtcctggcccacctagtgtcacacatccaatggcaactttg
gctcattcagattatccacaggaaggcatgcatcaaatgcataagtccttggatggcatg
catgagaaaggaatcgcagatgaaatacattgtgcttctgtgaagagtacaagtatgaga
ccacctcatcctggaatgggtccaccccagagtccaatggaccaacatagccaaggttat
atgtctcctcacccatctcctttgggagctcctgatcatgtgtccagcccaatgtctaca
ggtggaccaactcctccacaaataccaccaagccagccaggacctttgatgccaggagac
ccccaagttatgagccagcccacacgaggtccttcacctttcagtcctgttcaactgcat
cagcttcgagctcaaattttagcatacaaaatgttggctagaggtcagcctctacctgaa
aatttgcagcttgctgttcagggtaagaggacacttcctgggattcaacaacaacaacag
cagcagcagcagcagcagcaacagcagcagcagcagcaacaaatcattcctgctacttat
aatagaccccctggtatgggaatgcatccaatgggtgttcctcctgcaggaccaggacct
actccaggaatgccaggacatggtacaaatatgacccctaaaacgtggaccgaaggtcaa
ggttcagaaatgagtgttcccagcacacctcaaaagcttgcagtaccagctccaagtgga
agaccttctcctgcacctccagctgtccaacctcctgttgccatgcctggcccttcagtg
acacagccgacccctggacaaccaacatctattgtccagttgcaacaaaaacagaatcga
attagtcctatccagaaaccacaggggcttgaccctattgaaatacttcaggaacgagaa
tacaggcttcaagctcgtattgctcacagaatccaggagcttgaaaatttgcctggatct
ttgcctccagatctacgaaccaaagccacagtagaattgaaggcacttcgactcctgaac
tttcagcggcagctaagacaagaagtggtggcctgtatgagacgtgatacaaccctggaa
actgcgctgaactctaaagcttacaaacgcagcaagcgtcaaactcttcgtgaggcccgc
atgacagaaaaattggaaaagcagcaaaagattgagcaggaaaggaagcgtaggcagaag
caccaggaatatctcaatagcatcttgcaacatgctaaagacttcaaggaataccatcgc
tctgttactgggaaaattcagaaactttccaaagctgtggccacctggcatgccaacacc
gaacgtgagcagaaaaaagaaactgagcgaattgaaaaggaaaggatgagaagactgatg
gctgaagatgaggaaggttatcgtaaattgattgatcagaagaaagacagacgtcttgcc
tatctgctgcagcagactgatgaatatgtggctaatttgaccagtctggtatgggaacac
aaacaagcccaggcagcaaaagagaaaaagaaaagacgaaggcgaaagaagaaggctgaa
gaaaatgctgaaggaatgggatctggtttgggtcctgatggtgagctaatagatgagagc
agccagatgagtgatcttccagtgaaggtaatccacactgaaactggtaaagtcttgctt
gcaccagaagcaccaaaagctagtcagttggaaacgtggttagaaatgaatcctgggtat
gaagtagcacctagatcagacagtgaggagagtggctctgagtatgaggaagaggatgag
gatgacgaatccagtagacttgaatcagaagagaagatacgcataaatctaaacactgat
gatgttactgagaatgatgctaagcagatcatcgagacagctaaacaagatgtggatgac
gaatatagcatgcaagcagatgccagagaatctcagtcatattatgcagtggctcatgca
ataacagagagggtggagaagcaatcctctcttcttattaatggttcattaaagcattat
caggttcaaggcctggaatggatggtttcactgtacaataacaacttaaatggaatttta
gctgatgaaatgggtctgggaaagacaatccagactattgcccttatcacttatctaatg
gagcacaaaagattgaatggtccctatcttattattgttcctctttcgacgttatccaac
tggcaatatgaatttgacaaatgggctccttctgtggtgaaaattgcatataagggaaca
ccagccatgcgtcgctcactcgttcctcaacttcgaagtggaaaatttaatgtcctttta
actacttatgagtacataataaaggataaacacattcttgcaaagattcgatggaagtac
atgatagttgatgaagggcataggatgaagaatcatcactgcaagctgactcaagtcttg
aacactcattatgttgccccgagacgaatcctcctgactggaaccccactacaaaacaaa
ctacctgagctgtgggccctcttaaacttcctgcttcccactatcttcaaaagctgcagc
acatttgagcagtggtttaatgctccatttgccatgaccggagaaagggtagacttaaac
gaggaagagactatcttgattattcggcgcctccacaaagtactgcgaccgtttttatta
aggagattgaagaaagaagtagaatcacagctaccagaaaaggttgaatatgtgatcaaa
tgtgacatgtctgctcttcagaaaattctgtaccgtcacatgcaagccaagggaatcctt
cttacagatggctctgagaaagacaaaaaggggaaaggtggtgcaaagacactaatgaac
actattatgcagttgagaaaaatatgcaatcatccttatatgtttcagcatattgaggaa
tcttttgcggaacacttaggatactcggggggtgttattaatggagctgatctttatcga
gcatcaggaaaatttgaactccttgatcgcattctgccaaagttgagagctaccaaccac
cgggtcttgcttttctgtcagatgacttcacttatgactattatggaggattattttgct
ttccgtaacctgctatatttgcgccttgatggtacaacaaaatcagaagatcgtgctgct
ctgctgaagaagtttaatgaagaaggttcacaatacttcatatttttgttgagtacaaga
gcgggaggactgggtctgaatctccaggcagcagatacagtcgtaatctttgacagtgac
tggaatcctcaccaggatttgcaagctcaagacagagcacatcgaattggccaacagaat
gaagttcgggtactacgattatgcactgtaaacagtgtagaagagaagattcttgctgct
gctaaatataagctgaatgtcgatcagaaggtcatccaggcagggatgtttgatcagaaa
tcttcaagccatgaaaggagagctttcttacaagccatattggaacatgaggaacagaat
gagagccaaaagaaagatgaactttcaggcgataattcacaagaaggtgcaagccaggaa
gaagatgaagttcctgatgatgagactctgaatcagatgattgcacgaaatgaagaggaa
tttgacttatttatgcgaatggatatggatcgacgcagagaagatgccaggaacccaaag
cgcaggcctcgtttattggaagaggatgatctgccatcctggattatcaaagatgacgcg
gaagttgaaagactcacttgtgaagatgaggaagagaaaatatttgggcgagggtcacgc
caacgcagggatgtggattatagtgacacccttacagagaagcagtggctaagggcaatt
gaggacggcaacttggaagaaatggaagaggaagtgcgacttaagaagcgaaaacggcga
agaaatgtggataaagactccagtaaagatgatggagataaagccaagaaaagaagaggc
agaccacctgcagagaaactatcaccaaatccacccaaattgactaaacaaatgaacgcc
attattgatacggtgataaattacaaggacagctctgggcgacaactaagtgaagtgttt
gttcagctaccctctagaaaagaattaccagaatattatgaactaattaggaagccagtg
gacttcaagaaaataaaggaaagaattcgtaatcataaataccggagtgttggtgatttg
gaaaaagatgtgatgttactttgtcacaatgctcaaacattcaacttggaaggatctcag
atctatgaggattccattgtccttcagtcggtttttaagagcgcaagacagaagattgct
aaggaggaggagagtgaggaagaaagcaatgatgatgaggaagaggaggaggatgagtca
gaatcagagtcaaaatctgtgaaagtaaaaatcaggcttaataagaaggatgagaaaagc
cgagacaagggaaaaggcaaaaagcgccagagtcgggtaaaagcaaagccctgttgtgag
tga
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integrated database retrieval system
