KEGG   Geotrypetes seraphini (Gaboon caecilian): 117351256
Entry
117351256         CDS       T09159                                 
Symbol
WDR82
Name
(RefSeq) WD repeat-containing protein 82 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
gsh  Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:gsh00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    117351256 (WDR82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gsh03019]
    117351256 (WDR82)
   03036 Chromosome and associated proteins [BR:gsh03036]
    117351256 (WDR82)
Messenger RNA biogenesis [BR:gsh03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     117351256 (WDR82)
Chromosome and associated proteins [BR:gsh03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     117351256 (WDR82)
    COMPASS/SET1 complex (yeast)
     117351256 (WDR82)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_NOL10_N Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_RFWD3 NBCH_WD40 Beta-prop_IFT140_1st PAC11 WD_LRWD1 PEP5_VPS11_N Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C Beta-prop_EIPR1 MinC_C SMN_Tudor
Other DBs
NCBI-GeneID: 117351256
NCBI-ProteinID: XP_033782205
UniProt: A0A6P8PKU2
LinkDB
Position
17:complement(39268837..39346884)
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFD
KGPFATFKMQYDRTCEWTGLKFSNDGKLILIATNGGFIRLIDAFKGVVLHTFAGYNNSKA
VTLEASFTPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctgacggacaacgtgctgcgcagcttccgcgtggccaaagtcttccgcgagaac
tcggacaagatcaactgcttcgacttcagccccaacggcgagacggtgatttcgagcagc
gacgacgactccatcgtcctctacgactgtcaggagggcaagccaaagagaacgttgtat
agtaagaagtatggtgtggacctcatcagatacactcatgctgctaacacagtggtatac
agctccaacaaaattgatgatacaatcagatatctttccctccatgacaataaatacatc
cgctacttccctggacacagcaaaagggtggtagctctgtcaatgtctcccgttgatgac
actttcatttctggctcacttgataagaccatccgtctttgggatctgcgctctccaaat
tgtcagggtcttatgcatctccaggggaagccagtttgttcttttgaccctgaagggctc
atttttgcagctggaatcaattctgaaatggtcaaactttatgatttgcgttcttttgac
aagggtccatttgccacatttaagatgcagtacgataggacctgtgaatggacaggtctg
aaatttagtaacgatggaaaattgatcttgattgcgaccaatgggggctttattcgtctg
attgatgccttcaagggggttgtgttgcacacgtttgcgggatataacaacagtaaggca
gtgacactggaggcgtcgttcacacctgactcacagttcattatgataggctcagaagat
gggaagatccatgtctggaatggagaaagtgggatgaaagtggcagtcctggatgggaag
cacacaggccccataacctgcctacagtttaatcccaagttcatgacctttgccagcgct
tgttccaatatggcattttggctgccaactatagatgactga

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