Geotrypetes seraphini (Gaboon caecilian): 117351404
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Entry
117351404 CDS
T09159
Symbol
TOPORS
Name
(RefSeq) E3 ubiquitin-protein ligase Topors
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsh04121
]
117351404 (TOPORS)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117351404 (TOPORS)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
gsh03037
]
117351404 (TOPORS)
Enzymes [BR:
gsh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117351404 (TOPORS)
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117351404 (TOPORS)
UBL E3 ligases
117351404 (TOPORS)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
117351404 (TOPORS)
Cilium and associated proteins [BR:
gsh03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
117351404 (TOPORS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
PWI_Topors
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-rbx1
zf-C3HC4_4
zf-RING_5
RING_XB3-XBAT31
zf-ANAPC11
Rad50_zn_hook
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
117351404
NCBI-ProteinID:
XP_033782528
UniProt:
A0A6P8PF27
LinkDB
All DBs
Position
1:489736726..489793658
Genome browser
AA seq
1028 aa
AA seq
DB search
MMASATKELTMSSSFSPKAGTSKRQRHPVTTDASPDSKCPICLDRFDNMSYLDRCLHRFC
FRCIQEWSKNKAECPLCKQPFHSIFHSVRAEDDFKEYILRPSQNGSFGSPDGHRFRYRTT
LTRERRTPVRSHRSTSVRRTLSPPDNGILFEGLVGQTNIQRDEGIHQMIRQFASRRQTST
EGRPSRHDQEQDIINFRRALYRSGVRVRSIQDGGRYRDISAEFFRHNPACLHRLVPWLKR
ELLVLFGAHGSLVNIVQHIIMSNVTRYDLESQTFAEDLKPFLLHRTDHFLHEFISFARCP
YNIDAYDLHANYDYPAPSYEEGSHSDSSVITISPEECDSRDPDLLSSEAGTGQTPWDDET
PGPSYSTLEPAPTTVSSLVDTSESSDEESTRRVTDTQVEVKVDPGLVGEAITSSTDDCVI
VGFIKPLAERTPELVELSSDSEESLYEEKIEDKKLQQLQLSPFSENSDSSTSSSPSSTGS
KGRKTHKTKQNQTSSFSSKFGSLSKEEKDKGKRTCDLLPSKNCVRKSSAKKQRSYISKKR
ERSRSPNPISHLVQARDQRNRRTHHSKERHRSRSSRSWENTHNRDRRDNGRLMIRDRSLS
RRSQTVSLTSESSISREEVRSGSRSSDRGSGRSRSRDSDYGYPADNYKSTYRWEYTYYNR
NRERDGFDRSCRRKTRGKGYYQRRSTSPDFRIQHYSERKHTQSQRCHNKTSQHYRERFRS
RSHSSNRSRMTVGGAERIRNEKPSGKRKYKTRHLEHANQINKTSHQGTLNLKGKENRRLK
SPLGHSSHYNEDDLSDSRASSESRHKRKKKARSSSVEIVYEGKTTAMSRHHKKKKKKQKK
KHKRHHAASSIHTSPVVITINSDSEKEDMDCDDGSNWAATNLSNESEREVPSGLAACQRK
DAFDVDLVSKDDHCAVSDEGGSDVSDKDAHIVTSNMNLEAATGILDDFHFDESSNEETFT
VVDSIGSDSGLDTSSTVIEGTPADQPSLSSSTRTACEENSLERPQLILRLPKSLIEKNYL
FDHLGKKT
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgatggcatcagcaactaaggaacttacaatgagtagcagtttttcacctaaagctggc
accagcaagcggcagcgccacccagtgacaacagatgcctcaccagattcaaagtgcccc
atctgtttggaccgatttgacaacatgtcttacctggatcgatgcttgcacaggttctgc
tttcgctgtattcaagaatggtcaaagaacaaagcagaatgcccactatgtaagcagcca
ttccactctatctttcacagtgtgagggctgaggatgatttcaaagagtacattctcaga
ccctcacagaatggttcttttggcagtcctgatgggcacaggtttcgttaccgcaccacc
ttgacaagggaacgtcgcacaccagttcgctctcacagaagtacatcagtgcggaggact
ctttcaccaccagataatgggattctatttgaaggacttgtaggtcaaacaaacatacag
agagatgaagggattcatcagatgataaggcagtttgcttctaggaggcaaacaagtaca
gagggaagaccctcacggcatgatcaggaacaagacattataaatttcaggagggcactc
tatcgttcaggagtgcgtgtcaggagcattcaagatggtggacgctatagagatatttct
gcagaatttttccgacacaatcctgcctgccttcaccgattagtcccatggctgaagcgt
gagttgttagttctttttggggcccatggttctttggtcaacattgtacagcacattatt
atgagtaatgtcacacggtatgatctggagagtcaaacatttgcagaggacctgaagcct
ttcctgctccatcgtactgatcattttttacatgaattcattagctttgcccgctgtccc
tataacatagatgcttatgacctgcatgcaaactatgattaccctgctccttcatatgag
gaagggagccattctgattcttctgttattacaatatctcctgaagaatgtgattctaga
gatccagatttgctatcatctgaggctggcactggtcagaccccttgggatgatgaaact
ccagggccttcttattctactttggaaccagcgccaaccacagtatcttctctagtggat
acttctgaaagttcagatgaagaatccactagaagagtgacagatactcaggtggaagtg
aaggttgatccaggtctggttggtgaagccattacctcttccacagatgactgtgtgatt
gttggcttcattaagcctttagcggagaggactccagaactagttgaactgtcctcagat
tctgaagagtctctttatgaagagaaaatagaggataagaagctgcagcaactccagctt
agccctttcagtgaaaacagtgacagtagtacatcctcctcaccaagttccactggttct
aaaggcagaaagacgcacaaaactaaacaaaaccagacatcctccttttcgtctaagttt
ggttctttaagtaaagaagaaaaggataaaggtaagaggacatgtgatttgcttccttca
aagaactgtgttaggaagtcttcagcaaaaaagcaaaggagctacatatcaaagaagagg
gaaaggtcaaggagtccaaacccaatttcacaccttgttcaagccagagatcagagaaac
aggagaacgcatcacagcaaagaaaggcacagaagcagaagttctcgaagctgggagaat
actcacaacagagacaggagagacaatggtagactaatgatcagagaccgcagcttgtcc
aggagaagccagactgtgtctttaaccagtgaaagttctatatctagagaggaagtcagg
tcaggctcccggagcagtgaccgtggcagtggaaggtcaagaagcagagatagcgattat
ggttatccagctgataattacaaaagcacttatcgatgggagtacacctactacaataga
aacagagaaagagatggttttgatcggtcttgtagaaggaagactcgaggaaaaggttac
tatcaaagacgttcaactagcccagatttcagaatacagcactattctgagaggaaacat
actcaaagccagaggtgccacaataaaactagtcagcattatcgggaaagattcagatct
aggagtcactccagtaatagatccaggatgactgttggtggagcagagagaatacgaaat
gaaaagcccagtggaaaaagaaaatacaaaactcgccatttggaacatgcaaaccaaata
aataaaacaagccatcaaggcaccttgaatttgaaagggaaagaaaatcgtcgccttaaa
tcacctttggggcacagtagtcactacaatgaggatgatctgtctgacagccgagcaagt
agtgagtcgaggcacaagagaaagaaaaaggctcgaagctctagtgttgaaatagtttac
gaaggaaaaactacagctatgtctcggcatcataaaaaaaagaaaaagaaacagaaaaag
aaacataagaggcatcatgcagccagttcaatacacacttcccctgtggttattaccata
aatagtgacagtgagaaggaagacatggattgtgatgatggcagtaactgggcagctaca
aatctatcaaatgaaagtgagagggaggtaccttcaggcctagcagcatgtcaacgcaag
gacgcttttgacgtggacctagtgagcaaagatgaccattgtgctgtgtctgatgaaggt
ggatcagatgtatcagacaaagatgcccatatagtcaccagcaatatgaatttagaagct
gcaactgggatactggatgacttccactttgatgaaagttcaaacgaagaaacttttact
gtggtagacagtataggtagtgattctggcctagatacctcttccactgttattgaagga
acaccagctgatcagcccagcctttcctcttctaccaggactgcgtgtgaagagaattca
ttggagagaccacaacttatattaagactgccaaagagcctcattgaaaagaactatttg
tttgatcatttgggtaaaaagacatag
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