Geotrypetes seraphini (Gaboon caecilian): 117351588
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Entry
117351588 CDS
T09159
Symbol
IRF1
Name
(RefSeq) interferon regulatory factor 1 isoform X1
KO
K09444
interferon regulatory factor 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
117351588 (IRF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117351588 (IRF1)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
117351588 (IRF1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
117351588
NCBI-ProteinID:
XP_033782971
UniProt:
A0A6P8Q7J5
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Position
18:complement(8885902..8901373)
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AA seq
336 aa
AA seq
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MGSKDKIIHTMPSTRLRMRPWLEQQINSNAIPGLEWLNKEQKFFQIPWKHAARHGWDMET
DACLFRSWAIHTGRYKLGEKEPDPKTWKANFRCAMNSLPDIEEVKDKSINKGSCAVRVYR
MLPNTPKVERRERKSKSLKGSKSRNSRKSTDDSLGLEDIVETRYSSCVPNDHSGYTIQGG
SVQNMEIGSTDATLDIAECRMSTEVLQGTQWQETSEMSVDSTNDLYPFQVSPLPPSSNGT
EEEGEKCLTEDLEKLLEQPSDWYQMSIDGKGFFINEVGFYDPNVQDQPAESEKMAGGEIE
LRLSADMKTGLDLISWLDPIIAPIRPSSLSAISCTH
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgggatcaaaggacaaaattatccacaccatgccttcaacaagactgcgaatgaggcct
tggctggaacagcagataaactccaatgccattccaggactggaatggctcaacaaggag
cagaagtttttccaaatcccttggaagcacgcagccaggcacggctgggacatggaaacg
gatgcttgtctcttccgtagctgggccattcacactgggcgatacaaattgggtgagaaa
gaaccagatcctaagacctggaaggcaaatttccgttgtgccatgaactctttgccagac
attgaagaagtgaaggacaaaagcattaataaaggctcctgtgccgtccgagtctaccga
atgctaccaaacacaccgaaggtggagagaagagagaggaaatcaaagtcacttaaaggg
tctaaaagcaggaacagcagaaagtcaactgacgattccttgggcttggaggacatagtg
gaaaccagatacagctcttgtgtgccaaatgaccacagtggctacacgattcaaggtggt
tcagttcagaatatggaaattggaagtacagatgccaccttagatattgcagaatgcaga
atgagtactgaggttctgcagggtacgcagtggcaggaaacttcagaaatgtctgtagac
agcacgaatgacttgtacccatttcaagtctcgcccttgccgccctcttccaatggcaca
gaggaagagggtgaaaaatgtctaacagaagaccttgaaaagctcttagaacagccttca
gactggtatcagatgagcatagatgggaaaggctttttcatcaatgaagttggtttctat
gaccctaatgttcaagatcagcctgcagaatcggagaaaatggcagggggagaaattgaa
ctccgacttagtgcagatatgaaaaccggtttagacctcattagctggctggatcctatt
attgcacccattcgtccttccagtttatcggctatctcctgcacacactaa
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