Geotrypetes seraphini (Gaboon caecilian): 117351618
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Entry
117351618 CDS
T09159
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117351618 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gsh01009
]
117351618 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gsh04515
]
117351618 (PCDH1)
Protein phosphatases and associated proteins [BR:
gsh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117351618 (PCDH1)
Cell adhesion molecules [BR:
gsh04515
]
Cadherins
Protocadherins
117351618 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
K319L-like_PKD
TMEM154
Mid2
Fibulin_C
Syndecan
MLANA
Glycophorin_A
CRA
EphA2_TM
MAP17
DUF6377
Motif
Other DBs
NCBI-GeneID:
117351618
NCBI-ProteinID:
XP_033783042
UniProt:
A0A6P8P281
LinkDB
All DBs
Position
18:43438921..43919568
Genome browser
AA seq
1227 aa
AA seq
DB search
MRTRCARKGDGMERFRQSRTVLLRLRMKWLSYLLFLWAFLQLPCLGEGTSIDFKVQEEQP
PNTLIGSLASDYGLPDTGHLYKLEVGAPYLRVDSKTGDIFTTETSIDRENLRECQNLFPG
ELCYLEYEVSITDLMANSAPRLLEGKIEVQDINDNTPNFASPVITLPIPENTNIGSLFSI
PLATDRDTGSNGVATYELMAGSEAHELFGLQVAEDQDEKQPQLIVMGNLDREQRDSYDLT
IRVQDGGNPPRASSALLRITILDMNDNAPKFEKMSYEAELSENSPIGHSVLQVKANDSDQ
GANAEMDYTFHQAPEIVRRLLRLDRSTGLITVQGLIDREDVSTLKFSVGAKDKGANPKSA
RTQVIITIKDMNDNKPTIEIRGIGLVTHQDGVANISEDVPVATAVALVQVSDRDEGENAA
VTCVVAGDVPFQLKPVSESGSDSKKKYFLQTTTPLDYEAVKEYTIEIVAVDSGNPPSSST
NSLKVQVVDVNDNAPVFTQSIMEVAFPENNSPNDLVMEVSASDADSGSNAKLTYSIVAEP
SSKGFFTINPDSGEIRVNTVLDREQRERYEFLVVAADKGSPNLTGTASVVINVMDKNDND
PKFMLNGYNFSVMENMPPLSPVGMVTVIDADKGENAHIRLSVEQGNGDFVIQNGTGTILS
SISFDREQQSTYTFRLKAVDSGDPPRSAYVGVTINVLDENDNAPFFTSPSNVTHEHITPL
TSPGTQITQVRAEDIDTGLNAELTYSITGGNPFDLFHISPNNGDIILEKEILRKHHGLHR
LVVRVNDKGKPSRHSTALVHVFVNETLNNRTLLDTLIWHSLNTPLEIDIAGDPEYERSKQ
RSNIIFGVIAGIIAVILVIILVVLVRYCRQKEAKSGYQAGKKETKDLYAPKQGNKNNKNK
NKAKKSKSPKLPKPVEEEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYR
SNSPLPSIQLQPQSPSASKKHQVVQDLPAANTFVGTGDNNSTGSDQYSDYSYRTNPQKYN
NKQLPHRRVTFSTSNQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYE
RTTPDGSIGEMEHPENDLRPLPDVAMTGNCTQECTEYGHSDTCWMPGQPSPNRRPKNALK
LSTFVPYQEKGSQEQISNGSPRISDDRSNSTTKMANIRLLPTYSAFSNSSHEPCKDSPMD
EIPLTQTSDFQQATTPSSQNAKREIYL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaggacccgctgcgcgaggaagggcgatggaatggagcgcttcaggcaaagtcggacg
gtcttgctgaggctcagaatgaagtggctgtcgtatctgctgttcctgtgggccttcctt
cagctcccttgtttgggggaagggacatctattgattttaaagtgcaagaagaacagcct
cccaacacacttattgggagcttggcctccgattatggtcttcctgatacagggcacctt
tacaaactggaagtgggggcaccttacctgcgtgtggatagcaaaacaggagacattttt
accactgagacatccatcgatagggagaacctgcgcgaatgtcaaaacctttttcccgga
gagttgtgctacttggagtacgaggtgtctatcacggacttaatggccaattctgcccct
cgccttttggaaggtaaaattgaagtccaggatattaatgataacacaccaaattttgct
tctcctgtgattacgttgcctatccctgagaacacgaacattgggtcacttttctcgatt
cctctggccacagaccgagacactggctccaacggcgtggccacctacgagctgatggca
gggtcagaggctcatgaactatttgggctacaggtggcagaagatcaggatgagaaacaa
ccacaactcattgtgatggggaacctggaccgggaacaacgggactcgtatgaccttact
ataagggttcaagatggtgggaacccaccgcgagccagtagcgccctactgcgtatcact
atcttggacatgaatgataatgcccccaagtttgaaaagatgtcgtatgaagcagaatta
tcggaaaacagccctattggccactctgttcttcaggtaaaagcaaatgattctgatcaa
ggtgctaatgcagagatggactacaccttccaccaagcaccagagattgtccgccgttta
ctcagattggacagatctacaggtctgattaccgttcagggcctcatcgatcgagaggat
gtcagcactttgaaattttcagttggcgcaaaggacaaaggtgctaatccgaagtctgcc
cgtacacaggtgatcataactatcaaagacatgaatgacaacaaacctaccattgaaatc
cggggcatcggtcttgtaacgcaccaggacggtgtggccaacatttcagaggatgtgcct
gtggcgacagctgttgctttggtgcaagtgtctgatcgggatgaaggtgagaatgctgca
gttacatgtgttgtagctggtgatgtccctttccagttgaaaccagtcagtgaatcgggc
agtgacagcaagaaaaaatattttttgcagactactacaccactggactatgaggctgtg
aaggaatacaccattgagatcgtggctgtggattctgggaatccgccatcatccagtact
aattcactaaaagtacaagtggtagatgtgaatgataatgctcctgtcttcacacaaagc
atcatggaagtggccttccctgagaacaattctccaaatgatctggtaatggaagttagt
gccagtgatgctgatagtggttccaatgccaagttgacttactccattgtggctgaacca
tcttccaagggctttttcaccattaatcctgattctggagagatccgtgtaaacactgtg
ttggatcgtgagcaaagggagcgctatgagtttcttgtggtagcagcagacaagggcagc
cctaatctgactgggacagcatctgtggtgatcaatgtgatggacaagaatgataatgac
cccaagttcatgcttaatggctataacttctcagtcatggaaaacatgccacccttgagc
ccagtaggtatggtaacggtaattgatgcagacaaaggtgaaaatgcccatatcagactc
tctgtagagcaaggtaatggtgactttgtcatccagaatggcacaggcactatactttcc
agtatctcctttgaccgtgagcagcagagcacttacacatttcgattgaaggccgttgat
agtggagaccctccgcgttctgcttatgtaggtgtgactatcaatgtactagatgaaaat
gacaatgcaccctttttcacatccccttctaatgttacacatgaacacataacaccatta
accagccctgggactcagataactcaagtgcgtgctgaggatattgatacaggactcaat
gcagagttgacatatagcatcacaggaggtaacccatttgatttatttcacatctcaccc
aataatggtgatattatcctagagaaagagatccttaggaagcaccatggtctacaccgg
ttggtggtgcgtgtaaatgacaagggtaagccctcacggcatagtaccgcactagtacat
gtttttgtgaatgagaccttgaacaacagaactctattggataccctaatttggcatagc
ctgaatacgcctcttgagattgacatcgctggtgaccccgagtatgagagaagcaagcaa
cgcagtaatattatatttggagtaatcgctggtattatcgctgtcatattagtaatcata
ttggtggtgctggtgcgctactgtcgtcagaaggaagccaagagtggctaccaggctggt
aaaaaggagactaaggatctatatgcaccaaaacaagggaacaagaacaataaaaacaaa
aacaaggcaaagaaaagcaaatcgcctaagcttccaaaaccagttgaggaagaggaggag
acgggactccagaaatcactcaaattcaacctgatgaatgattcagttagcgacagcccc
aggattcacctgcccttgaattatcctccaggcagccctgacctgggacgtcattatcgc
tccaactccccactgccctctattcagcttcaaccgcagtctccttctgcctctaagaag
caccaagtggtgcaagacttgccagctgctaacacattcgttggcactggggacaacaat
tccactggttctgatcagtattcggattacagctatcggaccaacccccagaaatacaac
aataagcagttacctcatcgtcgagtgacattctccacatccaatcaggctcaagagcta
caggatccctcccagcacagttactacgatagtggattggaggagtctgagactcccagc
agcaagtcttcatcagggccccggattgggcccttggctctccccgaggaccactacgag
cgcaccacccctgatggcagcattggtgagatggagcaccctgaaaatgatctccgacca
ttgccagatgtagccatgacagggaactgtacccaggaatgcacagaatatggccactcg
gacacttgttggatgccaggccagccctctcctaatcgaagacccaagaatgccctcaaa
ctctccacttttgtgccttaccaagaaaaggggagtcaagagcagattagcaatggaagt
cctcgaatctcagatgaccgcagcaacagcaccaccaaaatggccaacatccgcctgtta
cccacatacagtgccttctcaaatagcagccatgagccctgcaaggactccccaatggat
gaaatcccccttacccaaacctctgacttccagcaagccactactccatcatcgcaaaat
gccaagagggagatttacctgtga
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