Geotrypetes seraphini (Gaboon caecilian): 117351637
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Entry
117351637 CDS
T09159
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117351637 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117351637 (DDX46)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117351637 (DDX46)
Spliceosome [BR:
gsh03041
]
Complex A
U2 snRNP components
U2 related factors
117351637 (DDX46)
Complex B
117351637 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
117351637
NCBI-ProteinID:
XP_033783105
UniProt:
A0A6P8PN06
LinkDB
All DBs
Position
18:10986818..11033821
Genome browser
AA seq
1047 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGSRSKSRSPSDKRVKRGDERRSRSRDRDRRRERSRSRDRRRS
RSRDRKRLSRRSRSRERERSRERERSRERRRSRSRERRWSRSRSRTRRSHSLSPSKNKKS
ETRSRSKEKTEGTEVSKEKKKDEKDDEKEKEKEKEKEDSSFDQNKLEEEMRKRKERVEKW
REEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDDEEVGEGEKEGDEVEDEELDPLDA
YMEEVKEEVKKFNMGSVKGGSEKKSGPTITKVVTVVTTKKAATDSEKKKGELMENDQDAM
EYSSEEEELDLQTALTGYQTKQRKLLEPVDHGKIEYESYRKNFYVEVPELAKMSQEEVNA
YRLEMEGITVKGKNCPKPIKTWVQCGISMKILGSLKKHGYEKPTPIQAQAIPAIMSGRDL
IGIAKTGSGKTIAFLLPMFRHIMDQRPLEEGEGPIAIIMTPTRELALQITKECKKFSKTL
GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRGTYVVLDEAD
RMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILNKPIEVQVGGRSVVCSD
VEQHVIVIEEEKKFLKLLELLGHYQEAGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGG
IDQYDRDSIINDFKSGVCRLLVATSVAARGLDVKQLILVINYGCPNHYEDYVHRAGRTGR
AGNKGFAYTFITDEQARYAGDIIKALELSGTPVPSELEKLWADFKDQQKAEGKTIKKSSG
FSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAALDIDEQIETMFNSKKRVKDMAA
PGGGPAPNVPMPTAGNAEKLELAKKLALIINAQKNLGAEAQFYFTEDVMQQATNAVLRGG
TIQAPTVSAKTIAEQLAEKINAKLNYVPVEKQEEEKQEAGQNESFKRYEEELEINDFPQT
ARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKDPKEGERKIYLAIESANELAVQKAKAE
ITRLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtccaggcattatcggaagagatcgtcctcccgtggacgttctggaagc
agatccaaaagccgttcaccttctgataaaagagtcaagcgaggagatgaacggcgttct
agaagcagagatcgagaccgcaggagggagaggtcccgaagcagagacaggagaagatcc
cgctcccgggataggaagcgcttgagccggcgatcaagaagcagagagagggaacgaagc
agagagagggagcgaagtagagagaggagaagatctcgaagtcgtgaaaggagatggtct
cgcagtaggagccgcaccaggcggtcacactctctcagccccagcaagaacaaaaaatca
gagacacgatcaagatctaaagaaaaaacagaaggtactgaagtttcaaaggaaaagaaa
aaagatgagaaggatgatgagaaagaaaaagagaaagaaaaagagaaagaggacagtagc
tttgaccaaaataaactggaagaagaaatgagaaaacgcaaagagcgagtggaaaaatgg
cgagaagaacagcgaaagaaggccatggaaaacattggagaactaaagaaggaaattgaa
gaaatgaaacaagggaaaaagtggagcttggaagatgatgatgatgatgatgaggaggta
ggagaaggagaaaaggaaggtgatgaggttgaagatgaagaattggacccattggatgct
tacatggaggaggtcaaagaagaagtcaagaagtttaatatgggcagtgtgaaaggagga
agcgagaagaaatctggtccaactattacaaaagtagtgaccgtagtaacgactaaaaag
gcagccacagactcagagaagaagaaaggagaactcatggagaacgaccaggatgcaatg
gagtactcttcagaagaggaagaacttgacctccagactgctcttactggctaccagact
aaacagcggaagctacttgaaccagttgatcatgggaaaatagaatacgagtcctacagg
aagaacttttatgttgaagttccagaactggctaaaatgtctcaggaagaggtaaatgcg
tacaggctggaaatggagggcatcaccgtcaaaggaaaaaattgtcctaaaccaatcaag
acgtgggtacaatgtggcatctccatgaagattttgggttccctgaaaaaacatggatat
gaaaaaccaactcctatccaggcccaggctattcctgcaattatgtctggacgagacttg
attggtattgctaaaacaggaagtggcaagaccatcgcatttctgctgcctatgtttaga
catatcatggatcagaggccattagaagaaggagagggtccaatagctatcatcatgact
ccaactcgagagctggctctgcagatcaccaaagagtgtaaaaagttctccaaaacacta
ggacttcgagttgtttgtgtgtatggaggaacaggaatcagtgaacagattgctgagctt
aaaagaggtgcagaaattattgtttgcacaccaggtcgcatgattgacatgttagctgcc
aataatggccgtgtgacaaatctgcgaagaggtacatatgttgttctggatgaagctgac
aggatgtttgatatgggatttgagccccaggtgatgcgtattgtagataacgtcagacct
gatcgtcagactgtcatgttttccgctacttttcctagagctatggaggccttagctcgc
cggatcctgaataaacctattgaggtacaagttggaggcaggagtgtagtttgctctgat
gtggagcagcatgtgattgtaatagaggaagagaaaaagttcttgaagcttcttgagctc
ttaggtcactaccaggaggctggatcagtcatcatatttgtagataagcaggagcacgct
gacggcctgctcaaagacttaatgagagcatcctatccttgcatgtctcttcatggaggc
attgatcaatatgacagagacagcatcattaatgattttaagagtggtgtgtgcaggctt
cttgtggccacctctgtagcagcacgaggcttggatgtgaaacagttgatattagtgatc
aattatggctgtcccaaccattacgaagattatgtacacagagcaggacgcactggacga
gctggcaataaaggttttgcttacacttttatcactgatgaacaagcacggtatgctggc
gatattataaaagctctggaattatcaggaacaccagttccatcagaactggagaagctt
tgggctgacttcaaagaccaacagaaagctgaggggaaaaccattaagaagagcagtgga
ttttctggcaaaggcttcaaatttgatgaaaccgagcaggctttggctaacgaaaggaaa
aaactacagaaggctgctcttggcctgcaggactcggatgatgaagatgcagctcttgat
atcgatgagcagattgagaccatgtttaactccaaaaagagagtgaaagatatggcagcg
cctggcggtggtccggcaccaaatgtccctatgccaacagcaggcaatgctgaaaaactg
gaacttgccaaaaaactagctttgataatcaatgcacagaagaacctgggggcagaggca
cagttttacttcactgaggatgttatgcagcaagctacaaacgctgttctgcgaggaggc
accattcaagcacccacagtatcagcaaaaaccattgcagaacaactggctgagaagatc
aatgctaagcttaactatgtgcctgtggaaaaacaggaggaggagaaacaagaagcaggg
caaaatgaatcctttaagagatatgaagaggaattggagatcaatgatttccctcagact
gctagatggaaggttacatccaaggaagcactgcagagaataggtgaatactctgaagct
gctattacaatcagaggaacgtatttccctcctgggaaggatccaaaagaaggagagcgg
aagatttacttagccatagaaagtgccaatgaactggctgtacagaaagccaaagcagaa
attaccaggcttattaaagaagaacttattagattgcaaaattcatatcaaccaaccaac
aaaggaagatacaaagttttataa
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