Geotrypetes seraphini (Gaboon caecilian): 117351715
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Entry
117351715 CDS
T09159
Symbol
PCDHB1
Name
(RefSeq) protocadherin beta-1 isoform X1
KO
K16494
protocadherin beta
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gsh04515
]
117351715 (PCDHB1)
Cell adhesion molecules [BR:
gsh04515
]
Cadherins
Protocadherins
117351715 (PCDHB1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
117351715
NCBI-ProteinID:
XP_033783346
UniProt:
A0A6P8Q8U9
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Position
18:39356466..39423148
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AA seq
859 aa
AA seq
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MHFIQKNSSTEIALSGDVSCNREFSQASRFLRMASKLETTRLQRQVVTFFLLLCVTSAVS
ASFKYSIDEEMEIGSLVTNIANDLKLDIRKLASRKARIMSESNTQYFQLNINSGDLLIKE
RIDREELCGHLDPCVLSFEFLLENPVQFHRAEVRVQDINDNPPVFSNKQMVLKIHELSQP
NTRFTLERALDSDLGVNSVQNYRIVPNKHFQLDVQNGSDGRKYAELVLEKQLDHEELQEV
NLILFAIDGGRPPKSGTAQIKILVQDANDNFPQFSHSAYKVQLRENSAQNTLVFKTEASD
QDQGILGEITYSFSQVSEKVLKLFKLNQSTGEIIVRGFIDFEEARTHEINIQATDGGGLS
AHSKVIVEILDENDNSPEVIITSIVSPIPEDSLPGTVIAVLNVRDRDSKENGKTVCSVEG
VTPFSLRSSFKNYYSLVTEISLDREKVSEYNITIIATDCGSPSLTSQETVRVQISDINDN
PPLFKQNSYTIYVNENNSPSLLIGTLNAVDLDYEQNAKITYALLPNEVGEISVGSYFSIN
PENGNIYALQSLDYEKIRNFRAVVRATDGGSPSLSSNATLHFQVMDENDNPPIILYPIQE
STSLSSDLVPRSAQADYLVTKMVAVDGDSGQNAWLSFKLLKSTDASLFNVVEHNGEIRTT
RPITERDNIKQKLIIVVRDNGKPSLSTTAILNILLVDGFSEPYMQFPDLHSKDAKDSNLT
LYLVIALVLISFIFLVSVTVFIVVKIIKSRRSQEKYISAPGNFYGENEMPNNLIDLSGTG
TLSQSYRYEVCLTTESGGSEFKFLRPLLPSFPNHSGTIEVNAGSNPNSQPFSNPPDQDSS
IEDAAKIFVEKKICREEYL
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcatccaaaagaattcatccactgaaattgccctctctggtgatgtgagctgt
aaccgggaattttcgcaggccagtaggtttttgagaatggcgtccaagctggagactacc
cggcttcaaaggcaagttgtgactttctttcttttgctttgcgtgacaagtgcggtttct
gcatcatttaagtattccatagacgaagaaatggagatcgggtccttagtgactaacatt
gcaaatgatttaaaactggatatcagaaaactagctagccgcaaggctcgaataatgtcg
gaaagcaacacgcagtattttcagctgaatataaattccggagatctactaataaaggaa
agaatagaccgggaagagttatgcggacatcttgatccttgtgtgctaagcttcgaattt
ctgttagaaaacccagtccagttccaccgagctgaagtgcgggtacaggatatcaacgac
aatccccccgttttctcgaataaacagatggttttgaaaattcatgaattgtcccaacca
aacactcgctttacattggaaagagcgctggattcagatctaggagttaacagtgtccag
aattacagaattgttccaaacaaacattttcagctggacgtccagaatggcagcgatggc
aggaagtatgcagagttggtgctggagaagcagttagaccacgaggaactgcaggaagtt
aatttaatactttttgctatagatggcggtcggcccccgaaatccggcaccgctcagata
aagatattagttcaggatgcaaatgataatttcccccagttcagccactcagcatataag
gttcagttgagggaaaactccgctcagaatactttggtgttcaaaactgaagctagtgac
caggaccaggggatacttggggaaataacctattcattcagccaggtatctgaaaaagtt
cttaaactttttaaattaaaccaatccacgggtgaaataattgtccggggtttcattgat
tttgaagaagcaagaacacatgaaataaacattcaagcaacagatgggggagggttatct
gcccattctaaagtcattgttgagattctggatgaaaatgacaattcacccgaggtgatc
attacatcaattgttagtccaattccagaagattctttgccgggtaccgtgattgctgtt
ctcaatgtaagagatcgagattcgaaagaaaatgggaaaactgtttgttcagtcgaaggc
gtcacaccgttctccttaagatctagtttcaaaaattattattctctggtcactgaaatt
tctttagatagagagaaagtgtcagagtacaacataaccattattgcaacggattgcgga
tctccaagtctaactagccaggaaacagttagggtacaaatatcagatattaatgacaac
cctcctctgtttaagcagaactcatacaccatctatgttaatgaaaacaacagtccatcc
ttactgattggcaccttaaatgctgttgatttagactatgagcaaaacgccaaaattacc
tatgccttattgcccaatgaagtaggtgagatttctgtgggctcttatttttctatcaat
ccagaaaatggaaatatatatgctctacaatccttggattatgaaaagattcgaaacttt
cgggcagttgtgagagccacagatggaggttccccttcattaagcagtaatgcaaccctt
cactttcaagtaatggatgaaaatgacaatccccccatcattctatatcctatacaggaa
agcacttcactttctagtgacctggtacccagatctgcacaggctgattatcttgtcact
aagatggtagctgtagatggagattcgggccagaacgcctggctctccttcaaactacta
aaatccacagatgccagtctatttaatgtagttgaacataacggagaaataaggaccacc
aggccaataacagaacgtgataatataaagcaaaaacttatcatcgttgttcgagataat
gggaaaccatcattatccaccactgcaatattaaatatacttctggttgacggattttca
gaaccatatatgcaattcccggatttacatagcaaagatgcaaaagatagtaatctaact
ttgtatttagtgatcgcattagttttgatttcatttatttttctggtgtctgtgacagtg
tttatcgttgtcaagataattaaatcacgaagatctcaagaaaagtatatttcagcccct
gggaacttctacggagaaaacgaaatgccaaataatttaattgatttaagtggaactggt
actctctctcagtcttaccgttatgaggtgtgcttaacaacagaatcaggtggtagcgaa
tttaaatttcttcgacccttattaccaagttttcctaatcatagtggcaccattgaggtt
aatgctggaagcaaccctaactctcaacctttttctaatccaccggatcaagactcttcc
attgaggatgcagctaaaatatttgtagagaagaagatttgtagagaagaatatttgtag
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