Geotrypetes seraphini (Gaboon caecilian): 117351738
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Entry
117351738 CDS
T09159
Symbol
SOX30
Name
(RefSeq) transcription factor SOX-30
KO
K09271
transcription factor SOX15/30
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117351738 (SOX30)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117351738 (SOX30)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
117351738
NCBI-ProteinID:
XP_033783385
UniProt:
A0A6P8PNQ5
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All DBs
Position
18:17056851..17092320
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AA seq
701 aa
AA seq
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MERSGPGGACSPQSRPRQAWERCSGAGGGAGDQPRPQEVAEQLREAPCGESEVLRVKAEA
PEAQEAPSQGHCEPRAPSARGLWEAPEPRAGHNDYRALGRGSWEAPGHKKGHCDTEARAG
AGPKGPWEAPEGSHEPLTGDDKSRTKALCGGMHVLVRERAIKTEDVEGEPSEKKDPARPN
GYLHPQSKEVLLAQEASVFGTLSQDLRIPLTLHPVPPGTRIQFQGPPAAASDMIRLTKMP
LTPVPIKMQSLMEPSVKIETKDVPLTVLPSDAGMPDTPFSKDRNGHVKRPMNAFMVWARI
HRPALAKANPAANNAEISVQLGLEWNKLSEDQKKPYYDEAQKIKEKHREEFPGWVYQPRP
GKRKRFPLSSSTVFSSTSQNMITTSQPTIYPYRSPTYSVVIPSLSHSVGEAPPALQLPAP
PVQRPTPITLFQPSVGNASQIAVQTPNLPLRPPLPPQRSVLSTQADAHHGLSGPSTGPSR
SMERTPAVSVENSSRNMNNDSSVHSRFTASDMHMPKEYSSISTCPRGPPMAQAPPMPHPH
VYQPSPLGHPASLFGPPPRFSFHHPYFLPGPHYFPSSTCPYSRPPFGYGDFPNPMPECLG
YYEDRYQKHEAMFSALNREYPFREYSDERTQSEDSRSCESIEGVSYYTSHSSEEYLNSIP
HLDIGALENVFTAPTSAPSRIQRVNVTDSDEEDEGKVLRNL
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggagaggagcggcccgggcggagcctgtagcccgcagagccggcccaggcaggcgtgg
gagaggtgctccggcgcggggggaggagccggggaccagccccggcctcaagaggtcgcg
gagcagctccgagaggccccgtgcggggagagcgaggtgctgcgggtgaaggcggaggcg
cccgaggcccaggaagcgccgagccagggccactgcgagcccagggcgccctcggccagg
ggcctgtgggaggcgcccgagcccagggcggggcacaatgactaccgggccctcggcagg
ggctcctgggaggccccgggtcacaaaaagggccactgtgacaccgaggcccgggccggc
gccggccccaaagggccgtgggaggccccggagggcagtcacgagcccctgactggcgat
gacaagagcaggaccaaagcgctgtgcgggggcatgcacgtgctagtgcgcgagcgagcc
atcaagacggaggatgtggagggggagccgagcgagaagaaagaccccgccaggcccaac
ggctacctgcacccccagagcaaggaggtgctcctggcccaggaggccagcgtcttcggc
acgctctcgcaggacctgcggatccccttgacgctgcacccggtgccgcccggcaccagg
atccagttccaggggcccccggccgccgcctccgacatgatcagactgaccaagatgccc
ctgacgccggttcccattaaaatgcaatcgctcatggagccttcggtgaaaatagaaacc
aaagacgtccccctcacggtgctcccctcagatgcaggaatgcctgatactccctttagt
aaagacaggaacggccacgtaaagcggccgatgaatgcttttatggtttgggcaaggatc
catcggccagcgctagccaaggcaaacccagctgctaacaatgcagagatcagtgtgcag
ctagggctggagtggaacaaactcagtgaggatcagaagaagccttattatgacgaggcc
caaaagattaaagagaagcacagagaagagttccctggatgggtttaccagccacgacct
ggtaagaggaagcgttttcctctaagctcttcgacagtgttttctagcacatctcagaat
atgatcaccacaagccaacccacaatttatccctaccggtctcccacctactcagttgtg
attcccagtctgagtcattcagttggtgaagccccgcctgctttacagctgcctgctcct
cctgttcagcgccccactccaatcactcttttccagccaagtgttgggaatgctagccag
atagctgttcagactccaaaccttccccttcgtcccccactgcctcctcagcgctctgtc
ttatctactcaagcagatgctcatcatggtctctccgggccaagtacggggccgtctcgc
tctatggagagaacccccgcagtgtctgtggagaactccagccggaatatgaataatgac
agttcagtgcattccaggttcacagcttccgacatgcatatgccaaaggagtattctagt
atttccacttgtcctagaggtccacccatggcgcaggctccacccatgccacatccccat
gtctatcaaccttctcccttggggcacccagccagcttgtttggacctcctcctcgattt
tcctttcatcatccgtacttcctacctggaccccattacttcccatccagcacctgtcct
tatagccgtccacctttcgggtatggagactttcccaacccaatgcctgaatgccttggt
tattacgaagaccggtaccaaaagcacgaagccatgttttcagctctgaacagagaatat
cccttcagggagtacagtgacgagcgcacgcagagcgaagattcccgcagctgtgagagc
atcgaaggtgtgtcttactacaccagccacagcagcgaggagtacctcaattccatccca
catctggacatcggcgccctggagaatgttttcactgcccccacatctgcaccctcccgt
atccagagggtaaatgtgactgacagtgatgaggaagatgagggtaaagtgttgaggaat
ttataa
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