Geotrypetes seraphini (Gaboon caecilian): 117351814
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Entry
117351814 CDS
T09159
Name
(RefSeq) protocadherin alpha-C1-like
KO
K16499
protocadherin delta 2
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gsh04515
]
117351814
Cell adhesion molecules [BR:
gsh04515
]
Cadherins
Protocadherins
117351814
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
117351814
NCBI-ProteinID:
XP_033783548
UniProt:
A0A6P8Q8Q8
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Position
18:39240844..39243381
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AA seq
845 aa
AA seq
DB search
MDVIFLFCFLLYTVNGQIEYAVPEETAHGRFVGNIAKDLGIETVKLTLRKFRIISSSSKQ
YFNLDVHTGILSVKELIDREEICGSKSSCFLSYELVLENPLELHRLRVKILDINDNAPRF
PLKEYNLSMAEFLPAGSRFTLPDARDPDEGTNSVQTYIISSNDHFQLQTQTLGDGSKYPE
LVLDKALDREVQSTHRLVITAVDGGRPQRSGNARIVITVLDTNDNAPVFENSVYTATVAE
NAPQGTLVAQVHATDLDEGQNGEIRYSFRSSTAQELQDLFIIDAEKGDIKVNGVLDAEQS
GVQLHVEARDKGAFGRFSAAKVLVQILAVNNNAPVIAITSLSGPVPENAPPGTVIALLSV
VDKDLGGNGRVTCQIPADVPFQLKSSFDNYYTLVTDGSLNRETVSGYNITVIATDFGSPP
ISVSKIIRVEVSDVNDNSPRFSKSSLDVFVAENNLPGSLLCTVSAFDADLGTNGRVSYAL
KERDVKGMSVFNYVALNPEKAEIFATRSFDYEEIQELQFQIEAKDSGTPTLSSFLTVNVF
IVDQNDNAPVILYPATKEKSISVEIVPRHVHADYLVAKVVAHDADKGQNAWLSFQILQSS
DSRLFRISSTTGELRTTRSIQTADAVKQKLVILVKDSGEPTKSSTVSIGILLTDSLPQVL
PNFDDVLNPQEHLTNLNLYLIISLASISFVFLGFLIFLVFIKFCQSRSNSYSTYCPLGCC
DFLDDYDEYRSDVQIPPNPQLATSDLMEVDGVGTFSRTYRYKASLELGPSNNLHVHGENN
GPSSENLKNLHFSKFSIQSQETKEEQFNVILVVSKSLTYTLLLLTQLVYMLFHYLGNKLQ
VHKQT
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcatcttcctgttctgctttttattgtacactgtgaatggacaaatagagtat
gctgttccagaagaaactgcgcacggtagatttgttgggaatatagcgaaggacttaggg
atcgagactgtcaaattgaccttgcggaagttcagaatcatctccagttcaagtaagcaa
tattttaatttggacgttcacaccgggattttatctgttaaggaactcatcgacagagaa
gagatatgtggttccaaaagttcgtgtttcctcagctatgaactggtgctcgaaaatcct
cttgagctgcacagattgagagttaaaatactggatataaacgacaacgccccccgtttc
cctttgaaggagtataacttgagtatggccgaatttttacccgctggctctcggtttacg
cttcccgacgcccgggacccagatgaaggcaccaacagtgttcaaacgtatatcattagt
tctaatgatcacttccaactgcaaacacagacgctcggggatggaagcaaatatccagag
ctggtactagataaagcattggatagggaggtacagtctactcaccgactggtgatcacc
gccgtggacggtggacgaccccagagaagcggcaacgcccggatcgtgatcacggtcctg
gacaccaatgacaacgctccggtgttcgagaactcagtgtacacggcgacagtggcagaa
aacgccccccaaggtaccctggtagctcaggtgcacgccaccgatttagacgagggtcag
aacggagagatccggtactccttcaggagtagcaccgctcaggagctgcaagacttgttc
atcatagatgccgaaaagggagacattaaagtcaacggggtcttagacgcggaacaatct
ggggtccagttgcacgtagaggcgagagataaaggcgcgttcgggaggttcagcgcggcc
aaggtgctggtgcaaattcttgcggtgaacaataacgctcctgtgatagccataacgtct
ctttctggtccggttccggaaaatgcaccgcctggcaccgtgattgccctgctcagtgtc
gtggataaggatcttgggggaaacggtcgggtcacctgccagataccggccgacgtccca
tttcagctgaaatcttctttcgacaattattatactttggtcacggacggctctttgaat
cgcgaaacggtcagcgggtacaacatcaccgttatcgccaccgatttcggctcccctcca
atttccgtctctaaaattatacgagtagaagtgtcggatgtgaacgacaattcgcctcga
ttttccaagtcgtccttggacgtgttcgttgcagaaaataacctccccggatcgttgctt
tgcacagtatcggcatttgacgcggacctcggaacaaacggacgtgtttcctatgctcta
aaggaaagagatgtcaaaggcatgtccgttttcaactatgtagccttaaaccccgaaaaa
gcagaaatcttcgcgacgaggtcctttgactatgaagagattcaagagcttcagtttcaa
attgaagccaaagacagcgggacgccaaccctgagttcattcttaacagtaaatgtgttt
attgtggatcagaatgacaatgcccctgttatcttgtatcctgccacaaaggagaaatcc
atatctgtggaaatagttcccagacacgtgcatgctgattacctagtggccaaagtggtg
gcacatgatgcagacaagggacagaatgcctggctgtctttccagattcttcagtcttct
gattccagattgtttaggatctcatcaaccacaggagaactcagaactactcgttcaata
caaaccgcagatgctgtaaagcagaaacttgttattcttgtgaaggacagtggagaaccc
acaaaatcatccacagttagcattggcatactacttacagactcgcttcctcaagtactt
ccaaattttgacgatgttctgaatccacaagaacatctcaccaacctgaacctctatttg
attatttctttggcaagtatttcctttgtatttcttggatttttaatcttcctggttttc
ataaagttttgccaatctaggtcaaactcttactcaacatattgtccattgggatgttgt
gattttttagatgactatgatgagtatcgatctgatgttcagattccaccaaatcctcag
ctagcaacatcagatcttatggaagtagatggcgtgggaaccttttctcgaacttatcga
tacaaagcatctttggaacttgggcctagcaacaatttacatgttcatggagaaaacaat
ggtccgagctctgaaaacctcaaaaatttacatttttcaaagttctctattcagtcacag
gaaacaaaagaagaacagtttaatgtgatacttgtggtaagcaaaagtttaacatataca
ttactcttattgacacagttggtctatatgttgtttcactatttgggaaataaactccag
gtacataaacaaacctga
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