Geotrypetes seraphini (Gaboon caecilian): 117352082
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Entry
117352082 CDS
T09159
Symbol
HPS5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein isoform X1
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117352082 (HPS5)
Membrane trafficking [BR:
gsh04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
117352082 (HPS5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_HPS5
Beta-prop_HPS5
WD40_WDHD1_1st
PEP5_VPS11_N
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_CDC20-Fz
Beta-prop_RIG_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_2nd
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_Vps41
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
117352082
NCBI-ProteinID:
XP_033784053
UniProt:
A0A6P8PJK7
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All DBs
Position
19:complement(23974311..24073512)
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AA seq
1102 aa
AA seq
DB search
MSSVPLVPESCSHVLAEFETLDPLLSALRLDSSRLKCTCIAVSRKWLALGTSGGGLNLIQ
KDGWKQRLILTHKEGAISRVACCPHDDNYVAVATSQGIVVVWELNQERRGKPERVYLSSD
HKGRKVTALCWDTAALRVFVGDCLGKVSAIKVNSSKHGKAAAAFVMFPVQNITTVDSRVV
QLDYLDGRLLISSLTRSYLCDTEREKFWKIGNKERDGEFGACFFPAGKNSGNQQPLIYCT
RPGSRMWEVNFEGEVLSTHQFKQLLSLPPLPVINLKSDPQYNTSSCSPQSLAFPKLLFLS
EHCVMSWTERGIYVFAPQNVQVLLWSDVRDIQDISVYKNELFCLHLDGKVSHFSLLPVER
CIDRLLKRSFWNPAARVCYLFQNTLISNRTRKVLPLERLEHLKSQLDLSTQQELIGQLEE
VISKLESLDSACSSRRSSISSHESFSVLDSGIYRVISRRGSQSDEESCSLHSQNLSDDER
LKEVTLQQEEEQTELDNVSHASVMVDTDRNEPLLPFTIPLPFRSTSPLLSLQAMKDSVSS
FVRKTTEKIGTLHVNPDAKTRHEVKDETQQCDGIARLEEEEIRVKPQSKPPEEDRLQELK
TVTAEAVAKLQDPLVLFDTETLKQVLQEWLPHLEKAFGFQKASSMSIENCQNVHSADGDE
RDVLDEKESDLEAANSREEEVQRPTTSPKEASDHTFQVYSPCVVPKEIQEDLAQLTALCL
ELKIFANKSGDCAEQAADVTVLTCHFIRTHFFLLDLKRLKRCIAVVYQDSPTVWETYIQG
LKELTVSSPVTVAMDNEELPKILKLLSDLEPWDSPLLLAHATRLYEKFGEMALRPLIKFY
PSILPSNVLHLCRGDPAHFLAYLDSLVRSKPEDERLSLLKSLLQPESLRLDWLLLAVCHD
APQCVNTVNAEGKPRPRSHLFTWGYGQLISLLIKLPANFTMKEKMANICKMYGYWPGYVS
LCSELDRRKEAFTNIVYLDDMSLLDEATGLVPETLEEWKFVLHCAQSCSTSLNYSGTRKG
NIGAKSSSWANCIGVENISLLLAKVVGPDRAWLLLQECGLTGELSERFTRICEILRVAET
RQRALVQSMLERCERFLWSQQA
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgtgccactagtaccagaatcttgcagccatgtattggcagaatttgagact
ctggatccattactgtctgcactccggctggactctagtcgtttgaagtgtacttgtata
gcagtatcccgcaaatggcttgctctgggcacttcaggtggtggactgaatcttatccag
aaagatggctggaagcaaaggcttattctcactcataaggaaggagctatatcccgtgtg
gcgtgctgccctcacgatgacaattatgtggctgtggctactagccagggaattgtggtg
gtttgggagctgaatcaggagcggcgtgggaagcctgaacgcgtttacctctcttcagac
cacaaaggcaggaaggtcacagcgctctgttgggatacagcagcacttcgggtctttgtg
ggagactgtctagggaaagtatcagctatcaaggttaactcctccaagcatggaaaggca
gctgctgcttttgtgatgtttccggtccagaatatcaccacggttgactcccgagtggtt
cagctcgattatctggatggcagactactcatatcatccctcactcgctcctatttgtgt
gatacagagagagagaagttctggaagattggtaacaaagaaagagatggagaatttgga
gcttgtttctttccagctgggaagaattctgggaaccagcagccattaatctactgtaca
cgtcctggatccagaatgtgggaagtgaactttgagggtgaagtgctcagtacgcaccag
tttaaacagctgctgtccttgccgcctcttcctgttattaatctaaaatcagatcctcag
tacaatacatcttcatgttcaccccagtctttggcatttccaaaactcttatttttaagc
gagcattgtgtgatgagctggacggagcggggtatttatgtctttgctcctcagaatgtg
caggtgctactctggagtgacgtcagggatattcaggatatttcagtctataagaatgag
ctgttctgcctgcaccttgatggaaaggtttctcatttctcccttctgcccgtggagcgc
tgtattgaccgtctattgaagagaagcttctggaatcctgcagccagggtttgctatctc
tttcaaaacactctcatctctaacagaacaagaaaagtgctgcctttggagcgactggag
catctgaaatctcaactggatctttcaactcaacaagagctcattggccaactagaggag
gtgatttctaagctagagtctctggattctgcatgcagcagcagaagaagtagcatctca
tcacatgaaagcttcagtgtcttagacagtgggatctatcgggtgattagtcggagagga
agccagtcagatgaggaatcttgttctctgcacagccaaaatttgtcagatgatgagaga
cttaaagaagtcactttgcagcaggaggaagagcagactgaacttgacaatgtatctcat
gcctcagtgatggtcgacacagatcggaatgagcctttgctcccattcactattccatta
ccattccgttccacctctcctcttctctctctgcaggccatgaaggacagcgtttccagt
tttgttcgcaaaactactgaaaaaattggtacgcttcatgtaaaccccgatgccaaaacc
aggcatgaagtgaaagatgagacgcagcaatgtgatggcattgcgagactagaggaagag
gaaatcagagtaaaaccacagagcaaacctccagaagaagacaggctccaagagctgaag
actgtgacagcagaggcagtagccaagctgcaggacccattggttttgtttgacactgag
acactgaagcaggtcttgcaggagtggcttccccacctggagaaagcatttggctttcag
aaagcatctagcatgtcgattgagaattgtcagaacgtgcattctgctgatggagacgag
agagatgttctggatgaaaaggagtctgacttagaggctgcaaattctagagaggaagag
gttcagagacccaccaccagtcctaaggaggcatctgatcacacgttccaagtttattcc
ccgtgtgtcgttccaaaagaaattcaggaggacctcgcacaattaacagctttgtgttta
gaactgaaaatctttgctaataagagtggagactgtgctgagcaggcagcagatgtaact
gtccttacttgccacttcatacgcacacactttttcctcttggacctaaaaagactaaag
cgatgcattgcagtagtctatcaagacagtcccactgtatgggagacatatatccaaggt
ctgaaagaactgactgtgtctagtccagtgactgtagccatggacaatgaagagcttccg
aaaatactaaaattattaagtgatttggagccctgggatagtcctctgctgcttgcacat
gctacaaggttgtatgaaaagtttggggaaatggctttaagacccttaatcaagttctat
ccatctattttgccctcaaatgtcctgcatctctgtagaggagaccctgcacacttctta
gcctacttggatagccttgtcagatccaaacctgaagatgaaagattatccctgcttaag
tctcttctacagcctgaatctttaagactggattggctgctcttagcagtctgtcatgat
gccccacaatgtgtaaacactgtgaatgctgaaggaaaacccagaccccgctctcatttg
tttacttggggttatggccagttgatttcacttctgattaagctgcctgccaactttaca
atgaaggagaaaatggccaacatctgtaagatgtacggttattggccaggatatgtctct
ctctgttcagagcttgatagaaggaaagaagcattcaccaatattgtttatctggatgac
atgagcttgctggatgaagccactggcttggtacccgagactctggaggagtggaaattt
gtcctacattgtgcccagagctgcagcaccagtcttaactattcaggcactcggaaggga
aacattggtgccaagagctccagctgggcaaattgcatcggtgttgaaaatatatctttg
ttgcttgccaaggtggttggtccagatcgtgcttggcttcttttgcaggagtgtggactt
acaggggaactatctgagaggtttactaggatctgtgagattcttagagttgctgaaaca
aggcaacgagccctggtccagtcgatgttggaaaggtgtgaacggttcctatggtctcag
caagcataa
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integrated database retrieval system
