Geotrypetes seraphini (Gaboon caecilian): 117352148
Help
Entry
117352148 CDS
T09159
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117352148 (SOX6)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117352148 (SOX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
117352148
NCBI-ProteinID:
XP_033784223
UniProt:
A0A6P8QAJ0
LinkDB
All DBs
Position
19:27236957..28182649
Genome browser
AA seq
814 aa
AA seq
DB search
MPSSSDVLTGVIGQRRTDEWKDSGYIRMSSKQAASPFACAADGEEAMTQDLVSRDKEEGS
DQHMATHLPLHTIMHNKPHSEELPTLVTTIQADVDWDSVIATQHRMESDSNKLCSLYSFR
NTSTSPHKADEGGRERSELMASANFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDPSC
VEKLLSKDWKEKMERLNTTELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQ
KKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPI
FPHDQRTLAAAAAAQQGFLYPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAA
QLASMQVSPGAKMPSMPQLPNTAALSPTGVKSEKRGTSPVTQLKDEAAQPLNLSARPKTA
EPVKSPTSPTQNLFSVSKTSPVTLPSKSSNPSPVGGILARGSSLDILSSLNSPALFGDQD
TVMKAIQEARKMREQIQREQQQQPHHGADAKLSSLNSMGLNNCRSDKERTRFETLGPQLT
GKPHEDMKMGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDTRGR
STSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQ
ARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIP
ITTATGVVYPGAISMATTSPSPQMTSDCSSTSASPEPSIPVIQSTYGMKMDGRSLTGNDI
INGEEEMEMYEDFEDDPKSDYSSENEAPEAVSAN
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgagttctgacgttctgactggcgtgataggacaacgtaggactgacgagtgg
aaggacagcggctatataagaatgtcttccaagcaagctgcctctccatttgcttgtgct
gctgatggagaggaagcgatgacccaggacttggtatcacgagacaaggaagagggcagc
gatcagcacatggccactcatctgccgctccataccataatgcacaacaaacctcactct
gaggagctacctaccctcgtcaccaccatccaagcagacgttgactgggacagtgtgatc
gccacccagcatagaatggaatcagacagcaataagttatgttccctatattccttccga
aatacctctacctcaccacacaaagctgacgaagggggtcgtgagcgcagtgagctaatg
gccagcgctaattttggaacgccggaacgtcgcaaaggaagcctcgcagatgtggtagac
acgctaaaacagaagaaactagaagaaatgacaaggaccgagcaggaggatccctcttgt
gtggaaaaactactttctaaagactggaaggaaaaaatggaaagactgaacacaacagag
ctcttgggagaaattaaaggtacaccagagagtttggcagaaaaagaacggcagctttcc
acgatgatcacccagctaatcagtttgcgggagcagctcctggctgcgcacgatgaacag
aaaaagctggcagcttcgcaaatcgaaaaacagcggcagcaaatggaccttgcgcgccaa
cagcaggaacagattgcaagacaacagcagcagcttctgcaacagcagcacaaaatcaac
ctcctgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatcccaata
tttccacacgaccagcggacgttagcagcggctgccgcagctcagcagggattcctctat
cccccaggaataacatacaagccaggtgataactaccccgtgcagttcattccgtcaaca
atggcagctgctgctgcttctggactcagccctttacagctccagcaactctatgcagct
cagttggccagcatgcaggtatcaccaggagctaaaatgccatcgatgccacagctaccc
aacacagcagcactctcacctactggggtgaaaagtgaaaaaagagggaccagcccagta
acgcaactgaaggatgaagcagcacagccgctgaatttgtctgcccggcccaagacagct
gagcccgtcaagtcgccaacgtcgccaacgcagaacctcttctcggttagcaaaacaagt
cccgtgaccttgccgagcaaaagtagcaaccccagccctgtcggtggaatcctggcaagg
ggatcctctttagatatactctccagtcttaactcgccagccctgtttggggaccaggac
acagtcatgaaagctatccaggaggctcgtaagatgagagagcagatccagagagaacag
cagcagcagccccaccacggtgctgatgcaaaattgtcgtccctcaacagcatgggtcta
aacaactgcaggagtgacaaggagagaacacgctttgagactctgggcccacagttaaca
ggaaaacctcatgaagacatgaagatgggtccaggagtcattgacctcaccagacctgag
gatgcagaaggaagtaaagcaatgaatggctctgcagctaaactacagcagtattattgt
tggccaacaggaggtgctactgtggctgaagcccgagtctacagggatacacgtgggcga
agcaccagtgaaccacatattaagcgaccaatgaatgctttcatggtttgggcaaaggat
gagcgccgaaaaattctccaggcttttccagatatgcacaattccaacattagcaaaatc
ctaggctcacgttggaaatctatgtcaaaccaagagaaacaaccttactatgaagagcag
gcacgactcagtaagattcatctagaaaagtaccccaattacaagtacaaaccccgacca
aaacgcacctgcattgtggatggcaagaaactgcgtattggggaatacaagcaactgatg
agatctcgaagacaggagatgaggcagttcttcactgttgggcaacaacctcagattcca
atcaccacagcaacaggcgtcgtatatcccggtgccattagtatggcaaccacgagtcca
tcacctcagatgacatccgattgctccagcacctctgccagccccgaacctagcatccct
gtcatccagagcacttatggcatgaagatggatggcagaagcctcactggaaatgacata
ataaatggggaagaagaaatggagatgtatgaggactttgaggatgaccccaaatcagac
tatagcagtgaaaatgaagcccccgaggcagtcagtgcaaactga
DBGET
integrated database retrieval system
