Geotrypetes seraphini (Gaboon caecilian): 117352164
Help
Entry
117352164 CDS
T09159
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gsh03009
]
117352164 (IGHMBP2)
03012 Translation factors [BR:
gsh03012
]
117352164 (IGHMBP2)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117352164 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
117352164 (IGHMBP2)
Ribosome biogenesis [BR:
gsh03009
]
Eukaryotic type
Other ribosome biogenesis factors
117352164 (IGHMBP2)
Translation factors [BR:
gsh03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117352164 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Helicase_RecD
nSTAND3
DEAD
ResIII
AAA_16
IstB_IS21
AAA_22
Flavi_DEAD
PhoH
AAA
SLFN-g3_helicase
AAA_25
UvrD-helicase
Zot
ATPase
CbiA
VWA_2
SRP54
NPHP3_N
AAA_31
UvrD_C_2
AAA_18
ABC_tran
AAA_33
Motif
Other DBs
NCBI-GeneID:
117352164
NCBI-ProteinID:
XP_033784276
UniProt:
A0A6P8QBR4
LinkDB
All DBs
Position
19:39164235..39245787
Genome browser
AA seq
988 aa
AA seq
DB search
MESFVQRQLELLNEEREAEIEETRLWQESVSLKELQRKGVCLLKLQVASQRTGLYGKLLV
TFNPRKYDCEAALPSNSFGPGDIVGLYETASQSEQLATGIVTHITQKFITVAFSESNDGL
NMDRENDYRLLKLANDVTYRRLKNALNTLNQYHSGPARNLIDILFGHSISSLPGTTEPLL
FSNKSLNGSQKTAVSFALSQRELAIIHGPPGTGKTTTVVELIIQAVKQGLKVLCCAPSNV
AVDNLVDHLAAHGERILRLGHPARLLDCVQHHSLDAVLARSDNAQIVTDIRKDIDEAFVK
IKKTKEKGEKSHYRSEIKVLRKELKEREENAMTEILKHATVVLATNTGASDDGPLKLLPE
DYFDLVVIDECSQALEASCWIPLLKGKKCVLAGDHKQLPPTIISNKAAAKGLSLSLMERV
IQNYGDSAVQMLTVQYRMHHSIMQWASQEMYSGKLTAHQSVADHLLRDLPGVTSTEDTGI
PLLLIDTAGCGLFELDVEDEQSKGNQGEVRLVGLHLQALMEAGVKTSDMAVIAPYNLQVH
MLRQHLSHRFPDLEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAITRARR
HVAVVCDSRTVSNHKFLKTLVDYINEYGEVRTAFEYLDDIVPDNYSHESSQLPTEQGDRE
KVTACPAKKQSDRQTNHQKANKSPEALQRERPEDIPNQNLNQRNLHKELKERDSKIRQSE
FRVTLAEFLSDADKTEVDFPSSLNSHERLLVHQLAEEYGLQHISTGEGKERHITVGKTKM
MSTSQPPGNGDTSKEESPQPFANPEEENGGEQLSNSASLNSVDLKTLYLERMEREKARRE
GKTKQKQEQEMLEKKTKPEQRGKAPAKARTAISSEEDFDALISAAVKADNTCGFSKCKAS
ILTLGQLCIHCNRRYCLSHHIPEVHGCGEKAKSHARSRISREGVLYAGSGSKDISMDPSK
RAHLQRKLDKKLNELTDQRRSKKKDAEK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggagagcttcgtccagagacagttagagctcctcaacgaggagagagaagcggaaata
gaagagaccaggctgtggcaagaaagtgtctctttaaaagaactccagcgcaagggagtc
tgtcttctaaaacttcaagtagccagtcaaagaacagggctatatgggaagcttcttgta
acttttaatcctagaaaatatgactgcgaggcagcacttcctagtaacagctttggacca
ggtgatattgtgggactttatgaaactgcaagtcagagtgagcaacttgctacaggaatt
gtaacacacattacacaaaaattcatcactgtagccttcagtgaatcaaatgatggcctg
aacatggatcgagagaatgattacagactgttgaaattagccaatgatgtaacctacaga
agactaaaaaatgctttaaacacactgaatcagtatcattctggtccagctcgcaatctg
attgacatactgtttggccattctatttccagccttccaggaacaacagaacctctgctc
ttctccaataaatccctgaatggctctcagaaaactgccgtttccttcgcgctgtcgcag
agagagcttgccatcattcacggccctcctggcactggcaaaaccaccacggtggtggag
ctaataattcaagctgtaaagcaagggctaaaggttctgtgctgtgctccctcaaatgtc
gctgtggataatctggtagatcatctggctgcacatggcgagagaatactgcgcttgggt
cacccggcccgtctcttagattgtgtgcagcatcattctctggacgcggtgctggcacgc
agtgataatgcccagatagtgactgatattagaaaggatattgatgaagcttttgtcaaa
atcaaaaagactaaggaaaaaggagagaaaagccattatcgctctgaaatcaaggtactg
aggaaagagctaaaggaaagagaggagaatgccatgacagagatcctcaaacatgctaca
gtggttcttgcaacaaatacaggtgcgtctgatgatggcccactgaagttacttcctgaa
gattactttgatctggttgtgatagatgagtgttcccaggcactggaagcaagctgctgg
atccctttgctgaagggcaagaagtgtgtcctagctggtgatcataagcagctgccaccc
actataatttctaacaaggctgcggcgaaggggctttctctgagtttaatggagcgtgta
atacagaactacggggacagtgctgtgcagatgctgactgtgcagtaccggatgcatcat
tcgatcatgcagtgggcatcgcaagaaatgtattctgggaagcttactgcacaccagtct
gttgcagatcatctcttaagggatttgccaggagttacttctaccgaagatactgggatc
ccgttacttctcatagatacagctggctgtgggctgtttgagctagatgtagaagatgaa
caatctaaaggaaatcaaggcgaagtccgccttgttggtttgcacctccaggctttgatg
gaagctggtgttaaaacgagtgacatggcagtcattgcgccctacaatctccaggtgcat
atgctgaggcagcatctcagtcacagatttcctgacctggaaatcaaatctgtggatggc
ttccaaggaagagaaaaagaagccgttgtgctgtcatttgtgagatccaacagaaagggg
gaagtgggctttttggctgaagatcgaagaataaatgttgctattacccgtgcccggcgt
catgtggctgtggtgtgcgattctcgaaccgtcagcaaccacaagttcttgaaaaccctg
gtggattacatcaatgaatacggggaagtccggacagcttttgaatatctggatgatatt
gtgcctgataattactcgcatgaaagttctcaactccccactgagcaaggagaccgggaa
aaagtaaccgcctgtcctgcaaagaagcaatcggacagacagacaaatcaccagaaagca
aacaaaagccctgaagcgctgcagagagagcgcccagaggatattcctaatcagaatttg
aaccaacgcaatttgcacaaggaactgaaagaaagagacagtaaaatcagacaaagtgaa
tttagagtaacactcgctgaatttctcagtgatgctgacaaaacagaagtagactttcct
tcctccttaaattcccatgaaagattattagttcatcagttagcggaagaatatggacta
cagcacataagcactggagaaggaaaggagcgacacattactgtcggcaaaacaaaaatg
atgtcaacaagtcagcctccaggaaacggagacacaagcaaagaggaatcaccacaacca
tttgcaaacccagaagaagaaaatggtggagaacaattaagtaacagtgccagcttaaat
agcgtagatctaaaaaccttgtatttggaaaggatggaaagagaaaaggccaggcgtgaa
ggcaaaactaagcaaaaacaagagcaggaaatgctagaaaagaaaacaaaacctgaacaa
agaggtaaggccccagctaaggccagaactgccatctcctcagaggaagattttgatgcc
ctgatttctgccgcagtgaaagctgacaatacttgtggattttctaaatgcaaagcaagc
attctgaccttgggacagctctgtattcattgcaacagacgctactgtctgagtcaccac
atcccagaggtccatggctgtggcgagaaagctaaatctcacgctcgttctagaatcagc
cgagaaggtgttctgtatgctggaagtggctctaaagacatttctatggacccatctaag
agggcacatttacaaaggaaacttgataagaaactcaatgaattgacagaccagagaaga
tccaaaaagaaggatgcagaaaaatag
DBGET
integrated database retrieval system
