Geotrypetes seraphini (Gaboon caecilian): 117352182
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Entry
117352182 CDS
T09159
Symbol
COPB1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117352182 (COPB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117352182 (COPB1)
Membrane trafficking [BR:
gsh04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117352182 (COPB1)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
117352182 (COPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
Cnd1
HEAT_2
HEAT
HEAT_EZ
Arm
MMS19_N
CRAL_TRIO_2
Motif
Other DBs
NCBI-GeneID:
117352182
NCBI-ProteinID:
XP_033784333
UniProt:
A0A6P8QAT4
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Position
19:complement(30109887..30164204)
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVPMDSEPPSEISLKTDLEKGDVKSKTEALKKVIIMILNGEKLPALLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKEPELLEPLMPAIRACLDHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLVELKDHPTHERVLQDLVMDILRVLTTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDINEAAAADV
LEFVREAIQRFDSLRPLIVEKMLEVFQSIKSVKIYRGALWILGEYCSTKSDIQSVMTEIR
RSLGEIPIVETEIKRESGELKTEEEVTVGPAQKLVTEMGTYATQSALSSSRPAKKEEDRP
PLRGFLLDGDFFVAASLATTLTKIALRYVTLVQDKKKQNSFVAEAMLLMATVLHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMSDIFNKECRQSLSQMLSAKLEEEKLSQKKESEK
RSVTVQADDPISFMQLTAKNEMASKEDQFQLSLLAAMGTTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDTEF
RQMWAEFEWENKVTVNTNITDLNEYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSI
FGEDALANVSIEKPINLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKSCV
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagccgcagaaaatgtttgctacactttgattaatgttccaatggattctgaacca
ccatctgaaattagtttaaagactgatttggaaaagggagatgtaaagtcaaagacggaa
gccttgaagaaggtcattatcatgatcttgaatggtgaaaagctacctgcgcttctgatg
accattattcgctttgttcttcctttacaagatcataccatcaaaaaactgctgctggtc
ttttgggagattgttcccaaaaccactccagatggccgactattacaggaaatgatatta
gtatgcgatgcctacagaaaggatcttcaacatccaaatgaatttatccgtggctctaca
cttcgctttctgtgtaaattaaaagaacctgaacttttggaacctctaatgcccgctatc
cgtgcttgtctggatcatcgccacagctatgtacgcaggaatgcagtccttgcaatttat
acgatctacagaaattttgaacatttgattcctgatgcccctgaattaatccatgatttc
ctagtgaatgagaaagatgccagctgcaaaagaaatgcttttatgatgctcattcatgca
gatcaggatcgcgcattggattacctaagcacttgcattgaccaagtgcagacgtttgga
gacatccttcagttggttattgtggaactgatttataaggtctgccatgctaatccttcg
gaaagagctcgctttattcggtgcatttacaacttgctgcagtcttcaagccctgcggtg
aaatacgaagctgcagggactttggttaccctctccagcgcaccaacagctatcaaggca
gcagctcagtgttatattgacttaattattaaggagagcgataacaatgtgaaacttatt
gtactggatcgcttggttgaactcaaggaccatcctacccacgaacgtgttctacaggat
ttggttatggacatactgcgtgtattgacaacccctgatctagaagtaaggaagaaaaca
cttcagttagccctagatcttgtgtcctcccgaaatgttgaagagttggtcattgttttg
aagaaagaagtgattaagacaaataacgttacagaacatgaggatacagacaaatacaga
caactgcttgttcgcacgctgcactcctgtagtgttcgatttccagatatggctgcaaat
gttattccagtgctgatggagtttctcagtgatattaatgaagctgcagctgccgatgtc
ttagagtttgtgcgggaggccattcagcgatttgatagcctccgaccacttattgttgaa
aagatgcttgaagtctttcagtccatcaaatctgtcaagatataccgtggtgcactgtgg
attctcggagaatactgtagcacaaaaagcgacatccagagtgtgatgactgagatccgc
agatccttgggggagataccaatagtggagactgaaataaagagagaatctggtgagttg
aaaactgaagaggaggtgactgtgggaccggctcagaaattagtgacagagatgggtacc
tatgccacacagagtgcccttagcagttccagacctgccaaaaaggaggaagacagaccc
ccgttgcgtggatttctgctagatggggacttttttgttgctgcctcccttgcgacaact
ttgacaaagattgccttacgctacgtgacccttgttcaggacaagaagaagcagaattcc
tttgttgctgaagcaatgctactcatggcaaccgttcttcatctgggcaagtcttctctt
cccaaaaaaccaattacagatgacgatgtggatcgtatctcactgtgcctgaaggtgtta
tccgagtgttctcctttaatgagtgacattttcaacaaggaatgcagacagtccctctcc
cagatgttgtctgccaaattggaggaggagaagctgtctcagaagaaagagtccgagaaa
aggagtgtgactgtgcaggcggatgatcccatctcatttatgcagctgactgcgaaaaac
gaaatggcatctaaggaggaccagtttcagctgagccttcttgcagcaatgggtacaacg
caaagaaaggaagcagccgatcctcttgcatctaaactgaataaggttacccagttgact
ggtttctcggacccagtctacgcagaagcgtatgttcacgtcaaccagtacgatattgtc
ctggacgtccttgtggtaaaccagactagtgacactttgcagaactgcacgctggaactg
gccacgctaggtgacttgaaacttgtggaaaaaccatctcctttgactcttgcgccacat
gattttgctaacattaaggccaatgttaaggtagcttccaccgaaaacggcatcattttt
ggcaatattgtgtatgacgtgtcgggagcggcaagtgatagaaactgtgtggtcttgagt
gatattcacattgatattatggactatattcagcccgcctcttgtacagataccgagttc
cgtcaaatgtgggcagaatttgaatgggaaaacaaagtgactgtcaacacaaatatcact
gacttgaatgaatatctacaacacatactaaaatcaacgaatatgaagtgtctcacccca
gagaaggcactctctggttactgtggttttatggctgcgaatctctatgcacgctccata
tttggagaggatgcacttgcaaatgtcagcattgagaagccaattaatcttggaccagaa
gctcctgttaccggccatatacgaatccgtgcaaagagtcagggaatggctctgagtctt
ggagataagataaatctgtctcagaagaaatcatgtgtataa
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