Geotrypetes seraphini (Gaboon caecilian): 117352361
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Entry
117352361 CDS
T09159
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56-like
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsh04121
]
117352361
Enzymes [BR:
gsh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117352361
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117352361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
zf-RING_UBOX
zf-C3HC4
NHL
zf-C3HC4_3
zf-C3HC4_2
ANCHR-like_BBOX
zf-RING_5
zf-RING_2
PML_CC
VitK2_biosynth
TCTP
RING_XB3-XBAT31
DUF4422
Cytochrom_B562
RNase_Y_N
CYP38_PsbQ-like
GH123_cat
Phasin
CCDC138_cc
Motif
Other DBs
NCBI-GeneID:
117352361
NCBI-ProteinID:
XP_033784686
UniProt:
A0A6P8QD36
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Position
19:complement(38784493..38787879)
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AA seq
678 aa
AA seq
DB search
MAQAFISLPDLIREDYLSCKICFELYKNPKLLPCLHTYCQHCLELLVKRNYLKCPECRME
VNVKDGIANLKTNFFINNLLDLFETKKIKDFGCTICCSSQPVIARCLDCNDFLCQSCTQG
HHCSRQTRNHKVVNLNEFLDGLYDEEVRLRQEIYCQDHQREPLRFFCKTCNSAICRDCRL
LVHIQHEVGSMPDEVRKKRPEVKKMIEGLDSNIMNICKQQKVVKESIEKLKASGDSIKEH
ITDYVNKITAHLTEQKEAALERLATFQKEQMEEYLSVMHELRSQMDKAINTKKFSQEVMD
VGKDYEIMYLEKTMRNQIQELQTFKPQQLETKIPLLDIDLNEILSKLPPLFVVFSEDSKT
HDLDISEEDLYSNKQPKNAVSSNSATNAPLVTTQNPQPNNSCFNPRPLRKLFCTNTFDID
VDEENDYEPKVTGIAAFPGEGGILVVDSENNEIKRFSFNGDLRRSIELTDDDNITVCSVV
ICGNTLACSASCYLYFLSLGGNFQHKLKMRGGQDDDYKYPITSFESEYVAVSEGTLCSIS
LYNTKGECLDRVRPCGYEGGRFLFIAINSLENFIVADFTMQQIVIFERSGQIIYILNSSN
SILTKPFSLCVDDSDNILVVSTNEVIAFSADGENGEVLLNANNGVTKPRLVCIDSHGRLV
LLHDNTRISIYEFHTGSE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagcatttatctcattgcccgacctgatccgagaagactatctgagctgtaag
atctgctttgagttgtacaagaacccaaaacttctgccctgccttcacacctactgccaa
cattgtctagagttgctcgtaaaaaggaattatttgaagtgccctgagtgccggatggag
gtgaacgtcaaggatggcattgccaatctgaaaactaacttcttcatcaataatctcctt
gacctcttcgagaccaagaagataaaagactttggatgcacaatttgctgttctagccag
ccagttatagcccgatgcttagactgcaatgatttcttgtgtcagtcatgtacccaaggc
catcactgctctcgtcagactcgtaaccacaaggtggttaacctgaatgaattcttagat
ggcctatatgatgaagaagtgagacttcgtcaagagatatattgtcaggaccaccagagg
gagcccctgaggttcttctgcaaaacctgtaattcagctatctgcagggactgtcgcctc
ttagttcatatccagcatgaggtaggatccatgccagatgaagtacggaagaagaggcct
gaagtgaagaagatgattgaagggctagatagtaatatcatgaacatctgtaagcaacaa
aaagttgtgaaggagtcaattgaaaagctaaaagcatcaggagatagtatcaaagagcac
atcactgactatgtgaataaaatcactgctcacctaacagagcaaaaagaagctgctctt
gagagactggccacatttcagaaggaacaaatggaagaatacctttctgtgatgcatgag
ctccggagccaaatggataaggctatcaacacaaaaaaattttcacaagaggtgatggac
gtgggaaaggactatgagattatgtacctagagaagaccatgaggaatcagattcaagaa
ttgcaaacttttaaaccacagcagctggaaaccaaaatccctttgctagatatagatcta
aatgaaatcctttccaaattaccacccctctttgttgtgttctcagaagactcaaaaaca
catgatttagatatatctgaagaagacctatatagcaacaaacagccaaaaaatgcagtc
tcttcaaactcagcaacaaatgcccctctggtgaccacacagaacccccagccaaataac
tcttgcttcaatccccgacctttgagaaaactattctgtacaaatacatttgacatagat
gttgatgaggagaatgactacgagcctaaggtcactggaattgctgcttttcctggtgaa
ggaggaattctggtagtagacagtgagaataatgaaataaagcgcttctcttttaatggg
gacctccgcaggtccattgaactcacagatgatgacaacatcactgtctgcagtgttgtg
atctgtggaaataccttagcctgctctgctagctgttacctctacttcctgagccttggt
ggaaatttccagcacaaattaaaaatgcgaggaggtcaggatgatgattacaagtaccct
atcacctcttttgagtctgagtatgtggcagtcagtgaggggaccctttgctcaatctcc
ctctataacaccaaaggagaatgccttgaccgtgttcgcccctgtggctatgagggaggt
cggttcctctttattgccattaatagcttggagaatttcattgtggccgacttcaccatg
caacagattgtcatcttcgagagatcgggccagattatctacattctaaatagttccaac
tccatactgaccaaacctttcagcctatgtgtggatgattctgataacatcttggtggtc
agtacaaatgaagtgattgcattctcagcagatggagaaaacggggaggtgttattgaat
gccaataatggggtgacaaagccacgccttgtctgtattgatagccatggacgtcttgtt
ctgcttcacgataacactcgtatcagtatttatgaatttcacactggctctgagtag
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