Geotrypetes seraphini (Gaboon caecilian): 117352575
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Entry
117352575 CDS
T09159
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117352575 (YTHDC2)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117352575 (YTHDC2)
Spliceosome [BR:
gsh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117352575 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_N
Ank_2
Ank
AAA_19
nSTAND3
AAA_22
ATPase
PhoH
AAA_7
AAA_23
AAA_29
AAA_16
SRP54
T2SSE
Motif
Other DBs
NCBI-GeneID:
117352575
NCBI-ProteinID:
XP_033784978
UniProt:
A0A6P8QCH7
LinkDB
All DBs
Position
1:complement(536185358..536402797)
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AA seq
1478 aa
AA seq
DB search
MRERCWIASGEGREDKMSRPSSVSPRPSSAQSGPSGSGRAKGLKDIRIDEEVKIAVNIAL
ERFRYSDQKETEFPSSLTSTERAFIHRLCQSLGLISKSKGKGANRYLTVKKKDGSEMAHA
MMSCSLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNG
IPQVPVKRGGSEFDFFRQSLPVFEKQEDIVKIIKDNKVVLIVGETGSGKTTQIPQFLLDD
CYKNGIPCRIFCTQPRRLAAISVAERVAAERGEKIGQTIGYQIRLESRVSPKTLLTFCTN
GVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDVLQKHSCLKLILSSAALDV
NLFLRYFGGCPVIYIQGRPFEIKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTE
WYSAQDNIIKPESQRQRTVPAVPEDYDLLDDGGDTVFSQLTEKDVNCLEPWLVKEMDACL
SDIWLQKDVDAFAQLFHLILTENVSVDYRHSETSATPLMVAAGRGFSSQVEQLISMGANV
HSKASNGWMALDWARHFGQTEVVDLLESYSASLEFGNLDESSLVQADCNDLTSEDRELLK
AYHHSFDDEKVDLDLIMHLLYNICHNCDSGAILIFLPGYDEIVGLRDRILFDDKRFADNA
HRYQVFMLHSNMQTSDQKKVLKIPPLGIRKIILSTNIAETSITVNDVIFVIDSGKVKEAK
MHYPQIEDSCFSTGKKIIKKSFDALNHVTMLKMVWISKASAIQRKGRAGRCRPGICFRLF
SKLRFQNMLEFQTPELLRMPLQELCLHTKLLAPINCPIADFLMKAPEPPPTLIVRNAVQM
LKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVL
PTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEI
IIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGIYPNLVHVDRENVV
LTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAAAIQALPTDWLMYDEMTRAHRIANIRCC
SVVTPVSVVIFSGPARLPSNALQEPSSFRVDGVSNDSSDSEMEDRTTANLATLKLDEWLN
FKLEPEAASLLLQLRQKWHSLFLRRMRAPSKPWSQVDEATLRAIIAVLSTEEQSAGLQQP
SGIGQRPRPMSSEELPLTSSWRSNNSRKSSAETEFSDEPSSSERVHMKSPSPAFHQQLKY
KDRGVLHPKRSSDDQLSVKSADSSSYPSPCASPSPPSSGKEHLLQKLRTLVGEQQAGAFL
QKQGSKSPSPRPNMPIRFFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSTVYL
VFSVQGSGHFQGFARMSSEIGREKSQDWGSTGLGGVFKVEWIRKESLPFQYAHHLLNPWN
DNKKVQISRDGQELEPQVGEQLLQLWDRIPLGDKNPAH
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atgagggagagatgctggatcgcgagtggagaggggagggaagacaaaatgtctcggcca
agcagtgtgtccccaaggccaagcagtgctcagtcaggcccctctggttctggacgagct
aaagggctgaaagatatccggattgatgaagaagtgaaaattgctgttaatattgcattg
gagagatttcgctatagtgatcaaaaggagactgaatttccttcatctttgaccagtact
gaaagggcctttattcatcgactctgccagtctcttggtttgatctccaaaagtaaggga
aaaggagcaaacagatacctcactgtcaagaaaaaagatggatcagaaatggcgcatgcg
atgatgagttgtagtctgacccataacacaaaacatgctgttaggagcttgatccagagg
tttcctgtcaccaacaaggaacgtactgaacttcttcccaaaacagagcgaggaaatgtg
tttgctgttgaagctgaaaacagagaaatgagcaagacgagtgggcgacttaataatggc
atccctcaggttcctgtgaaaagaggaggctcagagtttgatttctttcgacaatctctg
cctgtgtttgaaaagcaagaagacattgtaaagattattaaggacaataaggtggttttg
atcgtgggagaaactggatcaggaaagaccactcagattcctcagttccttctggatgat
tgttacaagaatggcatcccctgtcgtatattctgcactcagccaaggcgtttggcagct
atttctgtggctgaaagggttgctgcagagagaggggaaaagattggacagacaataggc
tatcagatccgactggagagcagggtttctccaaagactcttctgacattttgcactaat
ggtgttttacttcgtacattgatggcaggagacagcacactatccactgtgacacatgtt
attgtggatgaagtccatgagagggatcgtttcagtgatttcctactaaccaaactgaga
gatgtcctgcaaaaacattcctgtttaaaactgattctgtctagtgcagccctggacgtt
aatctctttttgagatactttggagggtgccctgtcatatacatacaaggaagaccattt
gaaattaaggagatgtttcttgaagatatattacgaactacaggatatacaaataaagaa
atgttaaaatataagaaagaaaaacaacgagaagagaagcagcagaccactcttactgaa
tggtattctgcccaagacaacatcatcaaaccagaatctcagcggcagagaactgttcca
gcagtgccggaggattatgacctgctagatgatggaggtgacacagtgttcagtcagctg
actgaaaaagatgtgaattgcctggagccatggctggtaaaagaaatggatgcgtgtctc
tctgatatttggcttcagaaagacgtggatgcttttgctcagctgtttcatctcatttta
actgaaaatgtcagtgttgactataggcatagtgaaaccagtgcaactccgctgatggtc
gctgcaggccgaggtttctcaagtcaggtagagcagttaatcagcatgggggccaatgtt
cacagcaaagcatcaaatggctggatggctttggactgggctagacattttggacagact
gaagttgttgatcttcttgaatcttatagtgcctcactagagtttggaaatctggatgaa
agttcccttgtccaggcagattgcaacgatcttacttcagaggacagagaacttctgaaa
gcttatcatcatagttttgatgatgaaaaagtggatttggacttgattatgcatcttcta
tataacatatgccacaactgtgattctggggcgattttgatctttttgcctggctatgat
gagattgttggcttgagggatcgcatcctctttgatgacaagcgatttgctgataatgcc
cataggtatcaagtttttatgctccattccaacatgcagacatcagaccaaaagaaggtg
ctgaaaatccctcctcttggaatccgcaaaataattctttctacaaatattgcagaaact
agcatcacagtcaatgatgtcatctttgttattgactctggcaaagtgaaagaggcgaag
atgcactacccacagattgaggattcatgcttttctactggaaagaagattatcaagaag
tcctttgatgccttgaatcatgttaccatgctaaaaatggtatggatttcaaaagctagt
gccattcaaagaaaagggagagctgggcgctgtagacctggaatctgcttccgtttattt
agcaaactgcgatttcagaacatgttggaatttcagacacctgaacttctgagaatgcca
ttgcaggaactttgtttacacacaaaactactagctcctattaactgcccaattgcagat
tttctaatgaaagccccagagccaccccctactttaattgtgagaaatgctgtccagatg
ctgaagaccatagatgcaatggatacttgggaagatctaacagaacttggctatcatttg
gcagacctgccagtggagccacaccttggcaaaatggtgctgtgtgcagttgttctgaag
tgtttggaccccattcttactattgcatgtactttggcatatcgagatccttttgtccta
ccaactcaggcctcacaaaaacgtgcagccatgctgtgcagaaaacgttttactgcaggg
acatttagtgatcacatggcacttctgagagctttccaggcatggcagaaggcccgaagt
gatggctgggagagagcattttgtgagaaaaactttttgtctcaggctacaatggaaatt
atcattgggatgagaactcaacttcttggacagctccgagcctcaggttttgttagagcc
cgaggtggaggtgacattcgagatgtcaatactaattctgaaaactgggctgtagttaaa
gctgcactagtggctggaatttaccctaatttagtccatgtggatagagaaaatgtggta
ctgacaggacccaaagagaagaaagtgcggtttcaccccacttctgttcttagtcagcca
caatacaaaaagattcctccagcaaatggtcaagctgcagctattcaagccctccccaca
gactggctaatgtatgatgaaatgaccagagctcatagaattgctaatatcagatgctgt
tcagtagtgacacctgttagtgtggtcatattctctggacctgcaagattgccaagtaat
gctttgcaggaaccctcatcatttagagtggatggtgtgtctaatgatagtagtgacagt
gagatggaggataggaccactgccaatctagcaacactgaagctagatgaatggctaaat
tttaaactggagcctgaggctgctagtctactgttgcagctcagacaaaagtggcatagt
ttatttttacgccgaatgcgggcaccatcaaaaccttggtctcaggttgatgaagcaaca
ctcagagcaatcatagctgtcttaagtactgaagagcagtctgcgggcttacagcagccc
tctgggattgggcagagaccaaggcctatgtcttcagaagaacttccgctgacatcttcc
tggcggtcaaacaacagcaggaagagctctgcagaaactgaattctctgatgaaccatcc
agttcagaaagggtccatatgaaatctccttcaccagcatttcatcagcaactgaagtac
aaagacaggggagttttacatcccaagcgaagctctgatgatcagttatccgtaaaatca
gctgacagcagcagctaccccagcccatgtgccagcccatctccgccatcttctgggaag
gaacacctacttcagaagctaagaacacttgtgggggagcaacaggctggggcattttta
cagaaacagggttcaaagtctccttcaccaaggcctaacatgccaatccgtttttttatt
atgaagagtagcaacctcagaaacttggagatttcacagcaaaaagggatttggtctaca
acacccagcaatgagcgtaaactaaatcgtgctttttgggagagcagtacagtttacctg
gttttttctgtccaaggatcaggacatttccagggttttgctagaatgtcttcagagatt
ggacgtgaaaaaagccaggattggggctctacaggtcttggaggtgtgtttaaggtggaa
tggattaggaaagagagccttccgtttcagtatgcacaccatctgctgaacccttggaat
gataacaagaaagttcagatcagcagggatgggcaggaattggaaccccaggttggagaa
cagttgctgcaactatgggatcgtattcctctaggagacaaaaaccctgctcattga
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integrated database retrieval system
